update readme

zhangrengang · Sep 25, 2024 · 5dcdcb1 · 5dcdcb1
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Showing 1 changed file with 4 additions and 3 deletions.
diff --git a/SOI-tools.md b/SOI-tools.md
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 #### Macro-synteny phylogeny ####
 Before run the pipeline:
-1. install the lasest verion of [SOI](https://github.com/zhangrengang/orthoindex#installation) (not the release version);
-2. completed the [example pipeline] (https://github.com/zhangrengang/evolution_example) to get the orthologous synteny file `collinearity.ortho`;
-3. prepare file `species.config` to set the expected subgenome numbers for targeted species (TAB seperated):
+1. install the lasest verion of [SOI](https://github.com/zhangrengang/orthoindex#installation) by `python3 setup.py install`, 
+and have a check: `which soi-syn`;
+2. completed the [example pipeline](https://github.com/zhangrengang/evolution_example) to get the orthologous synteny file `collinearity.ortho`;
+3. prepare file `species.config` to set the expected subgenome numbers for the targeted species (TAB seperated):
 ```
 Vitis_vinifera  1
 Aralia_elata    2