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Anbindung BibSonomy API #159

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@zesaro zesaro commented Jan 16, 2024 •
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Mandatory checks

Closes #158

  • Change in CHANGELOG.md described in a way that is understandable for the average user (if applicable)
  • Tests created for changes (if applicable)
  • Manually tested changed features in running JabRef (always required)
  • Screenshots added in PR description (for UI changes)
  • Checked developer's documentation: Is the information available and up to date? If not, I outlined it in this pull request.
  • Checked documentation: Is the information available and up to date? If not, I created an issue at https://github.com/JabRef/user-documentation/issues or, even better, I submitted a pull request to the documentation repository.

ToDo:

@zesaro zesaro self-assigned this Jan 16, 2024
@zesaro zesaro linked an issue Jan 16, 2024 that may be closed by this pull request
Anbindung BibSonomy API #158
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@zesaro zesaro marked this pull request as ready for review January 16, 2024 00:22
@zesaro zesaro marked this pull request as draft January 16, 2024 00:22
@zesaro zesaro changed the base branch from main to bibsonomy January 16, 2024 09:19
@koppor
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koppor commented Feb 21, 2024

Good start 👍

zesaro and others added 21 commits March 11, 2024 22:33
@zesaro
Merge remote-tracking branch 'upstream/main' into 158-anbindung-bibso…
04e7c0c 
…nomy-api
Merge remote-tracking branch 'origin/main' into 158-anbindung-bibsono…
7e44a01 
…my-api

# Conflicts:
#	build.gradle
#	external-libraries.md
Merge remote-tracking branch 'origin/main' into 158-anbindung-bibsono…
b5798b5 
…my-api
@dependabot
Bump dev.langchain4j:langchain4j from 0.35.0 to 0.36.0 (JabRef#12202)
0cdd804 
Bumps [dev.langchain4j:langchain4j](https://github.com/langchain4j/langchain4j) from 0.35.0 to 0.36.0.
- [Release notes](https://github.com/langchain4j/langchain4j/releases)
- [Commits](langchain4j/langchain4j@0.35.0...0.36.0)

---
updated-dependencies:
- dependency-name: dev.langchain4j:langchain4j
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

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@dependabot
Bump org.wiremock:wiremock-standalone from 3.3.1 to 3.9.2 (JabRef#12203)
a803099 
Bumps [org.wiremock:wiremock-standalone](https://github.com/wiremock/wiremock) from 3.3.1 to 3.9.2.
- [Release notes](https://github.com/wiremock/wiremock/releases)
- [Commits](wiremock/wiremock@3.3.1...3.9.2)

---
updated-dependencies:
- dependency-name: org.wiremock:wiremock-standalone
  dependency-type: direct:production
  update-type: version-update:semver-minor
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@dependabot
Bump org.junit.jupiter:junit-jupiter from 5.11.0 to 5.11.3 (JabRef#12204
df43047 
)

Bumps [org.junit.jupiter:junit-jupiter](https://github.com/junit-team/junit5) from 5.11.0 to 5.11.3.
- [Release notes](https://github.com/junit-team/junit5/releases)
- [Commits](junit-team/junit5@r5.11.0...r5.11.3)

---
updated-dependencies:
- dependency-name: org.junit.jupiter:junit-jupiter
  dependency-type: direct:production
  update-type: version-update:semver-patch
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@dependabot
Bump com.konghq:unirest-java-core from 4.4.4 to 4.4.5 (JabRef#12205)
7670e95 
Bumps com.konghq:unirest-java-core from 4.4.4 to 4.4.5.

---
updated-dependencies:
- dependency-name: com.konghq:unirest-java-core
  dependency-type: direct:production
  update-type: version-update:semver-patch
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@dependabot
Bump DavidAnson/markdownlint-cli2-action from 17 to 18 (JabRef#12206)
6a4492c 
Bumps [DavidAnson/markdownlint-cli2-action](https://github.com/davidanson/markdownlint-cli2-action) from 17 to 18.
- [Release notes](https://github.com/davidanson/markdownlint-cli2-action/releases)
- [Commits](DavidAnson/markdownlint-cli2-action@v17...v18)

---
updated-dependencies:
- dependency-name: DavidAnson/markdownlint-cli2-action
  dependency-type: direct:production
  update-type: version-update:semver-major
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@dependabot
Bump gittools/actions from 3.0.0 to 3.0.2 (JabRef#12207)
5f4180a 
Bumps [gittools/actions](https://github.com/gittools/actions) from 3.0.0 to 3.0.2.
- [Release notes](https://github.com/gittools/actions/releases)
- [Commits](GitTools/actions@v3.0.0...v3.0.2)

---
updated-dependencies:
- dependency-name: gittools/actions
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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@dependabot
Bump appleboy/ssh-action from 1.1.0 to 1.2.0 (JabRef#12208)
536a69e 
Bumps [appleboy/ssh-action](https://github.com/appleboy/ssh-action) from 1.1.0 to 1.2.0.
- [Release notes](https://github.com/appleboy/ssh-action/releases)
- [Changelog](https://github.com/appleboy/ssh-action/blob/master/.goreleaser.yaml)
- [Commits](appleboy/ssh-action@v1.1.0...v1.2.0)

---
updated-dependencies:
- dependency-name: appleboy/ssh-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
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@dependabot
Bump codecov/codecov-action from 4 to 5 (JabRef#12209)
7957eea 
Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 4 to 5.
- [Release notes](https://github.com/codecov/codecov-action/releases)
- [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md)
- [Commits](codecov/codecov-action@v4...v5)

---
updated-dependencies:
- dependency-name: codecov/codecov-action
  dependency-type: direct:production
  update-type: version-update:semver-major
...

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@koppor @gradle-update-robot
Update Gradle Wrapper from 8.11 to 8.11.1 (JabRef#12218)
38b70e2 
Signed-off-by: gradle-update-robot <gradle-update-robot@regolo.cc>
Co-authored-by: gradle-update-robot <gradle-update-robot@regolo.cc>
@Siedlerchr
move check for invalid characters to linked files editor (JabRef#12219)
4f8ece3 
* move check for invalid characters to linked files editor

Fixes JabRef#12212

some cleanup

* fix checkstyle

* restore switch

* set working dir path

* checkstyle

* add test

* fix import
@subhramit
[OO] Major performance improvements & fixes (JabRef#12221)
de81430 
* Transform \n-><p>, reduce LibreOffice API calls, improve documentation

* Remove unnecessary regex transform, improve trailing regex match

* Fix tests

* Minor fix - comment
@dependabot
Bump gittools/actions from 3.0.2 to 3.0.3 (JabRef#12224)
2651e71 
Bumps [gittools/actions](https://github.com/gittools/actions) from 3.0.2 to 3.0.3.
- [Release notes](https://github.com/gittools/actions/releases)
- [Commits](GitTools/actions@v3.0.2...v3.0.3)

---
updated-dependencies:
- dependency-name: gittools/actions
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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@dependabot
Bump io.zonky.test:embedded-postgres from 2.0.7 to 2.1.0 (JabRef#12225)
e7a75f3 
Bumps [io.zonky.test:embedded-postgres](https://github.com/zonkyio/embedded-postgres) from 2.0.7 to 2.1.0.
- [Release notes](https://github.com/zonkyio/embedded-postgres/releases)
- [Commits](zonkyio/embedded-postgres@v2.0.7...v2.1.0)

---
updated-dependencies:
- dependency-name: io.zonky.test:embedded-postgres
  dependency-type: direct:production
  update-type: version-update:semver-minor
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@dependabot
Bump org.junit.platform:junit-platform-launcher from 1.10.3 to 1.11.3 (…
57d2a6e 
…JabRef#12227)

Bumps [org.junit.platform:junit-platform-launcher](https://github.com/junit-team/junit5) from 1.10.3 to 1.11.3.
- [Release notes](https://github.com/junit-team/junit5/releases)
- [Commits](https://github.com/junit-team/junit5/commits)

---
updated-dependencies:
- dependency-name: org.junit.platform:junit-platform-launcher
  dependency-type: direct:production
  update-type: version-update:semver-minor
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@dependabot
Bump commons-io:commons-io from 2.17.0 to 2.18.0 (JabRef#12226)
d41d274 
Bumps commons-io:commons-io from 2.17.0 to 2.18.0.

---
updated-dependencies:
- dependency-name: commons-io:commons-io
  dependency-type: direct:production
  update-type: version-update:semver-minor
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@dependabot
Bump dev.langchain4j:langchain4j-mistral-ai from 0.36.0 to 0.36.2 (Ja…
86d3a1a 
…bRef#12228)

Bumps [dev.langchain4j:langchain4j-mistral-ai](https://github.com/langchain4j/langchain4j) from 0.36.0 to 0.36.2.
- [Release notes](https://github.com/langchain4j/langchain4j/releases)
- [Commits](langchain4j/langchain4j@0.36.0...0.36.2)

---
updated-dependencies:
- dependency-name: dev.langchain4j:langchain4j-mistral-ai
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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@dependabot
Bump src/main/resources/csl-locales from 4753e3a to 96d704d (JabR…
3a2c71a 
…ef#12230)

Bumps [src/main/resources/csl-locales](https://github.com/citation-style-language/locales) from `4753e3a` to `96d704d`.
- [Release notes](https://github.com/citation-style-language/locales/releases)
- [Commits](citation-style-language/locales@4753e3a...96d704d)

---
updated-dependencies:
- dependency-name: src/main/resources/csl-locales
  dependency-type: direct:production
...

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@dependabot
Bump org.apache.logging.log4j:log4j-to-slf4j from 2.24.1 to 2.24.2 (J…
6b59c55 
…abRef#12229)

Bumps org.apache.logging.log4j:log4j-to-slf4j from 2.24.1 to 2.24.2.

---
updated-dependencies:
- dependency-name: org.apache.logging.log4j:log4j-to-slf4j
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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Siedlerchr and others added 30 commits January 12, 2025 14:37
@Siedlerchr
Merge remote-tracking branch 'upstream/main' into downgradeRunnerImage
7cfb793 
* upstream/main:
  Refactor the isUnwantedText (JabRef#12369)
  Searching for entries with empty field (JabRef#12376)
  Downgrade Ubuntu (JabRef#12375)
@Siedlerchr
fix linux build not updated
2143e66
@Siedlerchr
Merge pull request JabRef#12378 from JabRef/downgradeRunnerImage
92f93ed 
Downgrade runner image (replace condtions)
@dependabot
Bump org.glassfish.jersey.test-framework.providers:jersey-test-framew…
12d04cc 
…ork-provider-grizzly2 (JabRef#12380)

Bumps org.glassfish.jersey.test-framework.providers:jersey-test-framework-provider-grizzly2 from 3.1.9 to 3.1.10.

---
updated-dependencies:
- dependency-name: org.glassfish.jersey.test-framework.providers:jersey-test-framework-provider-grizzly2
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

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@dependabot
Bump org.glassfish.jersey.core:jersey-server from 3.1.9 to 3.1.10 (Ja…
4ded81a 
…bRef#12381)

Bumps org.glassfish.jersey.core:jersey-server from 3.1.9 to 3.1.10.

---
updated-dependencies:
- dependency-name: org.glassfish.jersey.core:jersey-server
  dependency-type: direct:production
  update-type: version-update:semver-patch
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@dependabot
Bump org.openrewrite.rewrite from 6.29.3 to 7.0.0 (JabRef#12383)
e9da46a 
Bumps org.openrewrite.rewrite from 6.29.3 to 7.0.0.

---
updated-dependencies:
- dependency-name: org.openrewrite.rewrite
  dependency-type: direct:production
  update-type: version-update:semver-major
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@dependabot
Bump buildres/abbrv.jabref.org from 93a2cad to e74e6eb (JabRef#12385
3f7d67a 
)

Bumps [buildres/abbrv.jabref.org](https://github.com/JabRef/abbrv.jabref.org) from `93a2cad` to `e74e6eb`.
- [Release notes](https://github.com/JabRef/abbrv.jabref.org/releases)
- [Commits](JabRef/abbrv.jabref.org@93a2cad...e74e6eb)

---
updated-dependencies:
- dependency-name: buildres/abbrv.jabref.org
  dependency-type: direct:production
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@dependabot
Bump src/main/resources/csl-locales from 96d704d to 9914965 (JabR…
ca64f88 
…ef#12386)

Bumps [src/main/resources/csl-locales](https://github.com/citation-style-language/locales) from `96d704d` to `9914965`.
- [Release notes](https://github.com/citation-style-language/locales/releases)
- [Commits](citation-style-language/locales@96d704d...9914965)

---
updated-dependencies:
- dependency-name: src/main/resources/csl-locales
  dependency-type: direct:production
...

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@dependabot
Bump src/main/resources/csl-styles from 080516e to 6bae16d (JabRe…
9fc8b55 
…f#12387)

Bumps [src/main/resources/csl-styles](https://github.com/citation-style-language/styles) from `080516e` to `6bae16d`.
- [Release notes](https://github.com/citation-style-language/styles/releases)
- [Commits](citation-style-language/styles@080516e...6bae16d)

---
updated-dependencies:
- dependency-name: src/main/resources/csl-styles
  dependency-type: direct:production
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@dependabot
Bump org.glassfish.jersey.containers:jersey-container-grizzly2-http (J…
b701821 
…abRef#12384)

Bumps org.glassfish.jersey.containers:jersey-container-grizzly2-http from 3.1.9 to 3.1.10.

---
updated-dependencies:
- dependency-name: org.glassfish.jersey.containers:jersey-container-grizzly2-http
  dependency-type: direct:production
  update-type: version-update:semver-patch
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@dependabot @calixtus @LoayGhreeb
Bump org.openrewrite.recipe:rewrite-recipe-bom from 2.23.2 to 3.0.0 (J…
64e625f 
…abRef#12382)

* Bump org.openrewrite.recipe:rewrite-recipe-bom from 2.23.2 to 3.0.0

Bumps [org.openrewrite.recipe:rewrite-recipe-bom](https://github.com/openrewrite/rewrite-recipe-bom) from 2.23.2 to 3.0.0.
- [Release notes](https://github.com/openrewrite/rewrite-recipe-bom/releases)
- [Commits](openrewrite/rewrite-recipe-bom@v2.23.2...v3.0.0)

---
updated-dependencies:
- dependency-name: org.openrewrite.recipe:rewrite-recipe-bom
  dependency-type: direct:production
  update-type: version-update:semver-major
...

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* Bump to version 3.0.1

---------

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Co-authored-by: Loay Ghreeb <loayahmed655@gmail.com>
@LoayGhreeb @Siedlerchr
Fix postgres unique constraint exception (JabRef#12373)
3caa658 
Co-authored-by: Christoph <siedlerkiller@gmail.com>
@dependabot
Bump lycheeverse/lychee-action from 2.1.0 to 2.2.0 (JabRef#12399)
e88b5da 
Bumps [lycheeverse/lychee-action](https://github.com/lycheeverse/lychee-action) from 2.1.0 to 2.2.0.
- [Release notes](https://github.com/lycheeverse/lychee-action/releases)
- [Commits](lycheeverse/lychee-action@v2.1.0...v2.2.0)

---
updated-dependencies:
- dependency-name: lycheeverse/lychee-action
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  update-type: version-update:semver-minor
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@dependabot
Bump gittools/actions from 3.1.1 to 3.1.3 (JabRef#12398)
131d463 
Bumps [gittools/actions](https://github.com/gittools/actions) from 3.1.1 to 3.1.3.
- [Release notes](https://github.com/gittools/actions/releases)
- [Changelog](https://github.com/GitTools/actions/blob/main/GitReleaseManager.yml)
- [Commits](GitTools/actions@v3.1.1...v3.1.3)

---
updated-dependencies:
- dependency-name: gittools/actions
  dependency-type: direct:production
  update-type: version-update:semver-patch
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@dependabot
Bump DavidAnson/markdownlint-cli2-action from 18 to 19 (JabRef#12400)
934179b 
Bumps [DavidAnson/markdownlint-cli2-action](https://github.com/davidanson/markdownlint-cli2-action) from 18 to 19.
- [Release notes](https://github.com/davidanson/markdownlint-cli2-action/releases)
- [Commits](DavidAnson/markdownlint-cli2-action@v18...v19)

---
updated-dependencies:
- dependency-name: DavidAnson/markdownlint-cli2-action
  dependency-type: direct:production
  update-type: version-update:semver-major
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@dependabot
Bump org.glassfish.jersey.inject:jersey-hk2 from 3.1.9 to 3.1.10 (Jab…
78ba140 
…Ref#12401)

Bumps org.glassfish.jersey.inject:jersey-hk2 from 3.1.9 to 3.1.10.

---
updated-dependencies:
- dependency-name: org.glassfish.jersey.inject:jersey-hk2
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@dependabot
Bump org.bouncycastle:bcprov-jdk18on from 1.79 to 1.80 (JabRef#12402)
5b10a86 
Bumps [org.bouncycastle:bcprov-jdk18on](https://github.com/bcgit/bc-java) from 1.79 to 1.80.
- [Changelog](https://github.com/bcgit/bc-java/blob/main/docs/releasenotes.html)
- [Commits](https://github.com/bcgit/bc-java/commits)

---
updated-dependencies:
- dependency-name: org.bouncycastle:bcprov-jdk18on
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  update-type: version-update:semver-minor
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@dependabot
Bump net.harawata:appdirs from 1.2.2 to 1.3.0 (JabRef#12403)
f1b490f 
Bumps [net.harawata:appdirs](https://github.com/harawata/appdirs) from 1.2.2 to 1.3.0.
- [Release notes](https://github.com/harawata/appdirs/releases)
- [Commits](harawata/appdirs@appdirs-1.2.2...appdirs-1.3.0)

---
updated-dependencies:
- dependency-name: net.harawata:appdirs
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@dependabot
Bump com.github.javaparser:javaparser-symbol-solver-core (JabRef#12404)
add35ab 
Bumps [com.github.javaparser:javaparser-symbol-solver-core](https://github.com/javaparser/javaparser) from 3.26.2 to 3.26.3.
- [Release notes](https://github.com/javaparser/javaparser/releases)
- [Changelog](https://github.com/javaparser/javaparser/blob/master/changelog.md)
- [Commits](javaparser/javaparser@javaparser-parent-3.26.2...javaparser-parent-3.26.3)

---
updated-dependencies:
- dependency-name: com.github.javaparser:javaparser-symbol-solver-core
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@zesaro
Merge remote-tracking branch 'upstream/main' into 158-anbindung-bibso…
9dbecf4 
…nomy-api

# Conflicts:
#	external-libraries.md
@zesaro
fix merge
d0e58a0
@ar-rana @Siedlerchr
@koppor @calixtus @InAnYan @subhramit
Implimented arXivId Parsing for PDF with arXivId (JabRef#12335)
4aa313d 
* Implimented arXivId Parsing forPDF with arXivId

* added Optional parameter

* merged fixes

* removed csl-styles

* fixed null arxiv issue on external imports

* Improved getArxivId Implementation

* reduced nesting and added arxiv constant

* reduced nesting

* modified testcase

* fix abbrev repo

* removed unnecessary 'if' clause

* Use EPRINTTYPE

Co-authored-by: Carl Christian Snethlage <50491877+calixtus@users.noreply.github.com>
Co-authored-by: Christoph <siedlerkiller@gmail.com>
Co-authored-by: Ruslan <ruslanpopov1512@gmail.com>
Co-authored-by: Subhramit Basu Bhowmick <74734844+subhramit@users.noreply.github.com>

* Update src/main/java/org/jabref/logic/importer/fileformat/PdfContentImporter.java

Co-authored-by: Ruslan <ruslanpopov1512@gmail.com>

* WIP

Co-authored-by: Carl Christian Snethlage <50491877+calixtus@users.noreply.github.com>
Co-authored-by: Christoph <siedlerkiller@gmail.com>
Co-authored-by: Ruslan <ruslanpopov1512@gmail.com>
Co-authored-by: Subhramit Basu Bhowmick <74734844+subhramit@users.noreply.github.com>

* Add completion using arXiv ID

Co-authored-by: Carl Christian Snethlage <50491877+calixtus@users.noreply.github.com>
Co-authored-by: Christoph <siedlerkiller@gmail.com>
Co-authored-by: Ruslan <ruslanpopov1512@gmail.com>
Co-authored-by: Subhramit Basu Bhowmick <74734844+subhramit@users.noreply.github.com>

* Adapt test case

Co-authored-by: Carl Christian Snethlage <50491877+calixtus@users.noreply.github.com>
Co-authored-by: Christoph <siedlerkiller@gmail.com>
Co-authored-by: Ruslan <ruslanpopov1512@gmail.com>
Co-authored-by: Subhramit Basu Bhowmick <74734844+subhramit@users.noreply.github.com>

* Fix test name

* "Fix2 number and year extraction for arXiv

---------

Co-authored-by: Siedlerchr <siedlerkiller@gmail.com>
Co-authored-by: Oliver Kopp <kopp.dev@gmail.com>
Co-authored-by: Carl Christian Snethlage <50491877+calixtus@users.noreply.github.com>
Co-authored-by: Ruslan <ruslanpopov1512@gmail.com>
Co-authored-by: Subhramit Basu Bhowmick <74734844+subhramit@users.noreply.github.com>
@koppor @InAnYan
Add initial doc for journal lists (JabRef#12406)
9e99f0c 
Co-authored-by: Ruslan <ruslanpopov1512@gmail.com>
@InAnYan @Siedlerchr
Update icons (JabRef#12408)
5046e06 
* Update icons

* Add to CHANGELOG.md

* copy over file to icon dir

---------

Co-authored-by: Siedlerchr <siedlerkiller@gmail.com>
@InAnYan @koppor
Refactor PDF import (JabRef#12310)
df438b8 
* Mega changes

* Make PdfBibExtractor be Importer

* Add merge dialog to import

* Renaming

* Revert to old name

* Rename to old names

* Revert to old code

* Fix style

* Add documentation

* Fix ids

* Update checkstyle to 10.21.0

# Conflicts:
#	build.gradle

* Rename method (and add JavaDoc)

* Use Java23 _

* Add Java comment

* Fix name

* Refine adr-template.md

* Fix ADR0043

* Refine comment

* Point to ADR-0043

* Revert to stream-based forEach (enabled by adding "final")

* Fix ADR

* Update a bit ADR

* Fix tests

* Fix tests

* Fix checkers

---------

Co-authored-by: Oliver Kopp <kopp.dev@gmail.com>
@Siedlerchr
Fix number column hits by adding css selectors
775fa9a 
Fixes JabRef#12413
@Siedlerchr
add changelog entry
f345fd5
@Siedlerchr
Merge pull request JabRef#12414 from JabRef/fixui
2381079 
Fix number column hits by adding css selectors
@Siedlerchr
New Crowdin updates (JabRef#12415)
5eda147 
* New translations jabref_en.properties (French)

* New translations jabref_en.properties (Italian)
@zesaro
Merge remote-tracking branch 'upstream/main' into 158-anbindung-bibso…
84d5115 
…nomy-api
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Anbindung BibSonomy API