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shardtree: Add `Reference` retention to make it possible to limit pruning. #458

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Job	Run time
Intra-doc links	1m 5s
Rustfmt	15s
Bitrot check	1m 7s
Test on ubuntu-latest	12m 38s
Test on windows-latest	12m 41s
Test on macOS-latest	12m 57s
	40m 43s