V3<> main sync #2330

jhamman · 2024-10-10T21:08:40Z

This PR merges the history from the main branch into the v3 branch. The merge was done with --strategy ours, favoring changes that occurred in the v3 branch over those on main.

Toward: #2308

TODO:

Add unit tests and/or doctests in docstrings
Add docstrings and API docs for any new/modified user-facing classes and functions
New/modified features documented in docs/tutorial.rst
Changes documented in docs/release.rst
GitHub Actions have all passed
Test coverage is 100% (Codecov passes)

…rs#1586) Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.8.10 to 1.8.11. - [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases) - [Commits](pypa/gh-action-pypi-publish@v1.8.10...v1.8.11) --- updated-dependencies: - dependency-name: pypa/gh-action-pypi-publish dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

…pers#1587) Bumps [conda-incubator/setup-miniconda](https://github.com/conda-incubator/setup-miniconda) from 2.3.0 to 3.0.1. - [Release notes](https://github.com/conda-incubator/setup-miniconda/releases) - [Changelog](https://github.com/conda-incubator/setup-miniconda/blob/main/CHANGELOG.md) - [Commits](conda-incubator/setup-miniconda@v2.3.0...v3.0.1) --- updated-dependencies: - dependency-name: conda-incubator/setup-miniconda dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

Prevent runtime-overhead in doing this check multiple times

Even if this is only a test, list comprehensions are faster than repeatedly call append(). Also use tuple instead of list when possible. Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>

Bumps [numcodecs](https://github.com/zarr-developers/numcodecs) from 0.11.0 to 0.12.1. - [Release notes](https://github.com/zarr-developers/numcodecs/releases) - [Changelog](https://github.com/zarr-developers/numcodecs/blob/main/docs/release.rst) - [Commits](zarr-developers/numcodecs@v0.11.0...v0.12.1) --- updated-dependencies: - dependency-name: numcodecs dependency-type: direct:development update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Joe Hamman <joe@earthmover.io>

…ers#1558) Co-authored-by: Joe Hamman <joe@earthmover.io>

It's faster and probably more readable. Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com> Co-authored-by: Joe Hamman <joe@earthmover.io>

Bumps [pymongo](https://github.com/mongodb/mongo-python-driver) from 4.5.0 to 4.6.1. - [Release notes](https://github.com/mongodb/mongo-python-driver/releases) - [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst) - [Commits](mongodb/mongo-python-driver@4.5.0...4.6.1) --- updated-dependencies: - dependency-name: pymongo dependency-type: direct:development update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Joe Hamman <joe@earthmover.io>

Starting with codespell 2.2.2, options can be specified in `pyrpoject.toml` in addition to `setup.cfg`: https://github.com/codespell-project/codespell#using-a-config-file Specifying options in a config file instead of command line options in `.pre-commit-config.yaml` ensures codespell uses the same options when run as pre-commit hook or from the command line in the repository root directory.

* Bump fsspec from 2023.10.0 to 2023.12.1 Bumps [fsspec](https://github.com/fsspec/filesystem_spec) from 2023.10.0 to 2023.12.1. - [Commits](fsspec/filesystem_spec@2023.10.0...2023.12.1) --- updated-dependencies: - dependency-name: fsspec dependency-type: direct:development update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> * Update s3fs as well * Fix s3fs --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Josh Moore <josh@openmicroscopy.org>

* Add type hints to zarr.create * Use protocol for MetaArray * Use protocol for Synchronizer * Fix Path typing * Add release note * Fix dim separator typing * Ignore ... in coverage reporting * Fix chunk typing --------- Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>

Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>

Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4.7.1 to 5.0.0. - [Release notes](https://github.com/actions/setup-python/releases) - [Commits](actions/setup-python@v4.7.1...v5.0.0) --- updated-dependencies: - dependency-name: actions/setup-python dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Joe Hamman <joe@earthmover.io>

Bumps [github/codeql-action](https://github.com/github/codeql-action) from 2 to 3. - [Release notes](https://github.com/github/codeql-action/releases) - [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md) - [Commits](github/codeql-action@v2...v3) --- updated-dependencies: - dependency-name: github/codeql-action dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* chore: update pre-commit hooks updates: - https://github.com/charliermarsh/ruff-pre-commit → https://github.com/astral-sh/ruff-pre-commit - [github.com/astral-sh/ruff-pre-commit: v0.0.224 → v0.1.8](astral-sh/ruff-pre-commit@v0.0.224...v0.1.8) - [github.com/psf/black: 23.10.1 → 23.12.0](psf/black@23.10.1...23.12.0) - [github.com/codespell-project/codespell: v2.2.5 → v2.2.6](codespell-project/codespell@v2.2.5...v2.2.6) - [github.com/pre-commit/pre-commit-hooks: v4.4.0 → v4.5.0](pre-commit/pre-commit-hooks@v4.4.0...v4.5.0) - [github.com/pre-commit/mirrors-mypy: v1.3.0 → v1.7.1](pre-commit/mirrors-mypy@v1.3.0...v1.7.1) * Attempt to fix ruff * Use isinstance --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Josh Moore <josh@openmicroscopy.org>

updates: - [github.com/astral-sh/ruff-pre-commit: v0.1.8 → v0.1.9](astral-sh/ruff-pre-commit@v0.1.8...v0.1.9) - [github.com/psf/black: 23.12.0 → 23.12.1](psf/black@23.12.0...23.12.1) - [github.com/pre-commit/mirrors-mypy: v1.7.1 → v1.8.0](pre-commit/mirrors-mypy@v1.7.1...v1.8.0) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* Bump fsspec from 2023.12.1 to 2023.12.2 Bumps [fsspec](https://github.com/fsspec/filesystem_spec) from 2023.12.1 to 2023.12.2. - [Commits](fsspec/filesystem_spec@2023.12.1...2023.12.2) --- updated-dependencies: - dependency-name: fsspec dependency-type: direct:development update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> * Update requirements_dev_optional.txt --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Joe Hamman <joe@earthmover.io>

Bumps [pytest-doctestplus](https://github.com/scientific-python/pytest-doctestplus) from 1.0.0 to 1.1.0. - [Release notes](https://github.com/scientific-python/pytest-doctestplus/releases) - [Changelog](https://github.com/scientific-python/pytest-doctestplus/blob/main/CHANGES.rst) - [Commits](scientific-python/pytest-doctestplus@v1.0.0...v1.1.0) --- updated-dependencies: - dependency-name: pytest-doctestplus dependency-type: direct:development update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

updates: - [github.com/astral-sh/ruff-pre-commit: v0.1.9 → v0.1.11](astral-sh/ruff-pre-commit@v0.1.9...v0.1.11) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* Drop 3.8 and add 3.12 * Try removing line_profiler * Also bump the minimal numpy to 1.21 * Drop 3.12 again * Revert "Try removing line_profiler" This reverts commit 837854b. * Update release.rst --------- Co-authored-by: Joe Hamman <joe@earthmover.io> Co-authored-by: jakirkham <jakirkham@gmail.com>

updates: - [github.com/astral-sh/ruff-pre-commit: v0.1.11 → v0.1.13](astral-sh/ruff-pre-commit@v0.1.11...v0.1.13) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* Bump actions/download-artifact from 3 to 4 Bumps [actions/download-artifact](https://github.com/actions/download-artifact) from 3 to 4. - [Release notes](https://github.com/actions/download-artifact/releases) - [Commits](actions/download-artifact@v3...v4) --- updated-dependencies: - dependency-name: actions/download-artifact dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> * Also bump upload-artifact see https://github.com/actions/download-artifact?tab=readme-ov-file#breaking-changes > Downloading artifacts that were created from action/upload-artifact@v3 and below are not supported. --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Joe Hamman <joe@earthmover.io> Co-authored-by: Josh Moore <josh@openmicroscopy.org>

zarr-developers#1615) * Update tutorial.rst to include section about accessing Zip Files on S3 Per discussion here, add information about about accessing zip files on s3: zarr-developers#1613 * Update release.rst * Implement d-v-b's suggestions --------- Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com> Co-authored-by: Josh Moore <josh@openmicroscopy.org>

* doc(v3): add v3 roadmap and design document * Update v3-roadmap-and-design.md * updates after latest round of reviews * Update v3-roadmap-and-design.md Co-authored-by: Norman Rzepka <code@normanrz.com> * Update v3-roadmap-and-design.md Co-authored-by: Sanket Verma <svsanketverma5@gmail.com> --------- Co-authored-by: Norman Rzepka <code@normanrz.com> Co-authored-by: Sanket Verma <svsanketverma5@gmail.com>

updates: - [github.com/astral-sh/ruff-pre-commit: v0.1.13 → v0.1.14](astral-sh/ruff-pre-commit@v0.1.13...v0.1.14) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

This patch removes fasteners and disables zarr.sync which uses process and thread Co-authored-by: Wei Ouyang <oeway007@gmail.com>

* deprecate(n5): add deprecation warning to N5Store * also deprecate N5FSStore * docs * fix doc

…evelopers#2129) Bumps the requirements group with 3 updates in the / directory: [numpy](https://github.com/numpy/numpy), [ipywidgets](https://github.com/jupyter-widgets/ipywidgets) and [azure-storage-blob](https://github.com/Azure/azure-sdk-for-python). Updates `numpy` from 2.0.1 to 2.1.0 - [Release notes](https://github.com/numpy/numpy/releases) - [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst) - [Commits](numpy/numpy@v2.0.1...v2.1.0) Updates `ipywidgets` from 8.1.3 to 8.1.5 - [Release notes](https://github.com/jupyter-widgets/ipywidgets/releases) - [Commits](jupyter-widgets/ipywidgets@8.1.3...8.1.5) Updates `azure-storage-blob` from 12.16.0 to 12.21.0 - [Release notes](https://github.com/Azure/azure-sdk-for-python/releases) - [Changelog](https://github.com/Azure/azure-sdk-for-python/blob/main/doc/esrp_release.md) - [Commits](Azure/azure-sdk-for-python@azure-storage-blob_12.16.0...azure-storage-blob_12.21.0) --- updated-dependencies: - dependency-name: numpy dependency-type: direct:development update-type: version-update:semver-minor dependency-group: requirements - dependency-name: ipywidgets dependency-type: direct:development update-type: version-update:semver-patch dependency-group: requirements - dependency-name: azure-storage-blob dependency-type: direct:development update-type: version-update:semver-minor dependency-group: requirements ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* chore: bump minimum version to 1.24 * Update .github/workflows/python-package.yml

Bumps the actions group with 2 updates: [actions/setup-python](https://github.com/actions/setup-python) and [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish). Updates `actions/setup-python` from 5.1.1 to 5.2.0 - [Release notes](https://github.com/actions/setup-python/releases) - [Commits](actions/setup-python@v5.1.1...v5.2.0) Updates `pypa/gh-action-pypi-publish` from 1.9.0 to 1.10.0 - [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases) - [Commits](pypa/gh-action-pypi-publish@v1.9.0...v1.10.0) --- updated-dependencies: - dependency-name: actions/setup-python dependency-type: direct:production update-type: version-update:semver-minor dependency-group: actions - dependency-name: pypa/gh-action-pypi-publish dependency-type: direct:production update-type: version-update:semver-minor dependency-group: actions ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

…pers#2151) Bumps the requirements group with 1 update: [numpy](https://github.com/numpy/numpy). Updates `numpy` from 2.1.0 to 2.1.1 - [Release notes](https://github.com/numpy/numpy/releases) - [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst) - [Commits](numpy/numpy@v2.1.0...v2.1.1) --- updated-dependencies: - dependency-name: numpy dependency-type: direct:development update-type: version-update:semver-patch dependency-group: requirements ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

… group (zarr-developers#2161) Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish). Updates `pypa/gh-action-pypi-publish` from 1.10.0 to 1.10.1 - [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases) - [Commits](pypa/gh-action-pypi-publish@v1.10.0...v1.10.1) --- updated-dependencies: - dependency-name: pypa/gh-action-pypi-publish dependency-type: direct:production update-type: version-update:semver-patch dependency-group: actions ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* remove primary sidebar from tutorial * lint

…opers#2172) Bumps the requirements group with 1 update: [pytest](https://github.com/pytest-dev/pytest). Updates `pytest` from 8.3.2 to 8.3.3 - [Release notes](https://github.com/pytest-dev/pytest/releases) - [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst) - [Commits](pytest-dev/pytest@8.3.2...8.3.3) --- updated-dependencies: - dependency-name: pytest dependency-type: direct:development update-type: version-update:semver-patch dependency-group: requirements ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

…s#2220) Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish). Updates `pypa/gh-action-pypi-publish` from 1.10.1 to 1.10.2 - [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases) - [Commits](pypa/gh-action-pypi-publish@v1.10.1...v1.10.2) --- updated-dependencies: - dependency-name: pypa/gh-action-pypi-publish dependency-type: direct:production update-type: version-update:semver-patch dependency-group: actions ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

…evelopers#2284) Bumps the requirements group with 3 updates in the / directory: [redis](https://github.com/redis/redis-py), [pymongo](https://github.com/mongodb/mongo-python-driver) and [h5py](https://github.com/h5py/h5py). Updates `redis` from 5.0.8 to 5.1.0 - [Release notes](https://github.com/redis/redis-py/releases) - [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES) - [Commits](redis/redis-py@v5.0.8...v5.1.0) Updates `pymongo` from 4.8.0 to 4.10.0 - [Release notes](https://github.com/mongodb/mongo-python-driver/releases) - [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst) - [Commits](mongodb/mongo-python-driver@4.8.0...4.10.0) Updates `h5py` from 3.11.0 to 3.12.1 - [Release notes](https://github.com/h5py/h5py/releases) - [Changelog](https://github.com/h5py/h5py/blob/master/docs/release_guide.rst) - [Commits](h5py/h5py@3.11.0...3.12.1) --- updated-dependencies: - dependency-name: redis dependency-type: direct:development update-type: version-update:semver-minor dependency-group: requirements - dependency-name: pymongo dependency-type: direct:development update-type: version-update:semver-minor dependency-group: requirements - dependency-name: h5py dependency-type: direct:development update-type: version-update:semver-minor dependency-group: requirements ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

…velopers#2288) Bumps the requirements group with 1 update: [pymongo](https://github.com/mongodb/mongo-python-driver). Updates `pymongo` from 4.10.0 to 4.10.1 - [Release notes](https://github.com/mongodb/mongo-python-driver/releases) - [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst) - [Commits](mongodb/mongo-python-driver@4.10.0...4.10.1) --- updated-dependencies: - dependency-name: pymongo dependency-type: direct:development update-type: version-update:semver-patch dependency-group: requirements ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

)

…s#2304) Bumps the actions group with 1 update: [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish). Updates `pypa/gh-action-pypi-publish` from 1.10.2 to 1.10.3 - [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases) - [Commits](pypa/gh-action-pypi-publish@v1.10.2...v1.10.3) --- updated-dependencies: - dependency-name: pypa/gh-action-pypi-publish dependency-type: direct:production update-type: version-update:semver-patch dependency-group: actions ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

Bumps the requirements group with 2 updates: [numpy](https://github.com/numpy/numpy) and [redis](https://github.com/redis/redis-py). Updates `numpy` from 2.1.1 to 2.1.2 - [Release notes](https://github.com/numpy/numpy/releases) - [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst) - [Commits](numpy/numpy@v2.1.1...v2.1.2) Updates `redis` from 5.1.0 to 5.1.1 - [Release notes](https://github.com/redis/redis-py/releases) - [Changelog](https://github.com/redis/redis-py/blob/master/CHANGES) - [Commits](redis/redis-py@v5.1.0...v5.1.1) --- updated-dependencies: - dependency-name: numpy dependency-type: direct:development update-type: version-update:semver-patch dependency-group: requirements - dependency-name: redis dependency-type: direct:development update-type: version-update:semver-patch dependency-group: requirements ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

…developers#2326) Bumps the requirements group with 1 update: [numcodecs](https://github.com/zarr-developers/numcodecs). Updates `numcodecs` from 0.13.0 to 0.13.1 - [Release notes](https://github.com/zarr-developers/numcodecs/releases) - [Changelog](https://github.com/zarr-developers/numcodecs/blob/main/docs/release.rst) - [Commits](zarr-developers/numcodecs@v0.13.0...v0.13.1) --- updated-dependencies: - dependency-name: numcodecs dependency-type: direct:development update-type: version-update:semver-patch dependency-group: requirements ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

dstansby · 2024-10-11T07:49:07Z

Since it doesn't look like this changes any files, is there a benefit to doing this that I'm missing?

joshmoore · 2024-10-11T08:01:50Z

I was also a bit confused by that. It might be that there were enough changes that -s ours is simply too big a hammer. It might require finding changes that should be preserved and hand-merging them.

jhamman · 2024-10-11T15:52:45Z

Closing in favor of #2335

dependabot bot and others added 30 commits December 4, 2023 09:13

* Cache result of FSStore._fsspec_installed (zarr-developers#1581)

25dbeed

Prevent runtime-overhead in doing this check multiple times

Bump version of black in pre-commit (zarr-developers#1559)

8579e21

Use list comprehension where applicable (zarr-developers#1555)

54e31e9

Even if this is only a test, list comprehensions are faster than repeatedly call append(). Also use tuple instead of list when possible. Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>

Use format specification mini-language to format string (zarr-develop…

10dee6b

…ers#1558) Co-authored-by: Joe Hamman <joe@earthmover.io>

Single startswith() call instead of multiple ones (zarr-developers#1556)

40a6e81

It's faster and probably more readable. Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com> Co-authored-by: Joe Hamman <joe@earthmover.io>

Remove unused mypy ignore comments (zarr-developers#1602)

12abd4e

Co-authored-by: Davis Bennett <davis.v.bennett@gmail.com>

Bump pytest from 7.4.3 to 7.4.4 (zarr-developers#1622)

435a7ca

chore: update pre-commit hooks (zarr-developers#1626)

6961fa9

updates: - [github.com/astral-sh/ruff-pre-commit: v0.1.9 → v0.1.11](astral-sh/ruff-pre-commit@v0.1.9...v0.1.11) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

Create TEAM.md (zarr-developers#1628)

ee51835

Add Norman Rzepka to core-dev team (zarr-developers#1630)

6ad464b

chore: update pre-commit hooks (zarr-developers#1633)

a292dc4

updates: - [github.com/astral-sh/ruff-pre-commit: v0.1.11 → v0.1.13](astral-sh/ruff-pre-commit@v0.1.11...v0.1.13) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

chore: update pre-commit hooks (zarr-developers#1636)

a81db07

updates: - [github.com/astral-sh/ruff-pre-commit: v0.1.13 → v0.1.14](astral-sh/ruff-pre-commit@v0.1.13...v0.1.14) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

Fix zarr sync (zarr-developers#1663)

4f2ace4

This patch removes fasteners and disables zarr.sync which uses process and thread Co-authored-by: Wei Ouyang <oeway007@gmail.com>

jhamman and others added 21 commits August 26, 2024 12:56

fix: numpy 1.24 compat for Array.__array__ (zarr-developers#2123)

d1b92b5

Deprecate N5Store (zarr-developers#2103)

2e928b1

* deprecate(n5): add deprecation warning to N5Store * also deprecate N5FSStore * docs * fix doc

Run tests on numpy 1.23 (zarr-developers#2124)

5bf57bd

chore: bump minimum numpy version to 1.24 (zarr-developers#2127)

cc2cdee

* chore: bump minimum version to 1.24 * Update .github/workflows/python-package.yml

Remove un-needed package installs in CI (zarr-developers#2095)

cb2c669

chore(docs): update release notes ahead of 2.18.4 (zarr-developers#2152)

88b2100

[docs] remove primary sidebar from tutorial (zarr-developers#2142)

774f5b1

* remove primary sidebar from tutorial * lint

Update TEAM.md (zarr-developers#2227)

53f600b

Fix low contrast box titles (zarr-developers#2287) (zarr-developers#2292

6b9ab9e

)

Merge remote-tracking branch 'upstream/main' into v3-main-sync

acd6655

jhamman changed the title ~~V3 main sync~~ V3<> main sync Oct 10, 2024

jhamman requested review from joshmoore and dstansby October 10, 2024 21:09

jhamman mentioned this pull request Oct 10, 2024

Moving v3 development to main #2308

Closed

3 tasks

jhamman mentioned this pull request Oct 11, 2024

V3 main sync w/ merge #2335

Merged

jhamman closed this Oct 11, 2024

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V3<> main sync #2330

V3<> main sync #2330

jhamman commented Oct 10, 2024

dstansby commented Oct 11, 2024 •

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joshmoore commented Oct 11, 2024

jhamman commented Oct 11, 2024

V3<> main sync #2330

V3<> main sync #2330

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jhamman commented Oct 10, 2024

dstansby commented Oct 11, 2024 • edited Loading

joshmoore commented Oct 11, 2024

jhamman commented Oct 11, 2024

dstansby commented Oct 11, 2024 •

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