Is the Escher widget compatible with JupyterLab 3?

[danolson1]

I can get the Escher widget to display correctly in JupyterLab v 2.2.6, but not in v. 3.0.11. In that version, I get an error message "Error displaying widget: model not found."

Has anyone else gotten the Escher widget to work in JupyterLab v3? Is this a known issue?

[sorenwacker]

Same problem with JupyterLab 3.0.14

[parsanayyara]

same problem with Jupyter 3.0.16!! @danolson1 did you somehow manage to fix the issue in v. 3? or did you end up using v 2.2.6?

[danolson1]

I set up an environment with jupyterlab 2.2.6 for Escher work

…

-Dan

On Tue, Jul 20, 2021, 7:47 AM parsanayyara ***@***.***> wrote: same problem with Jupyter 3.0.16!! @danolson1 <https://github.com/danolson1> did you somehow manage to fix the issue in v. 3? or did you end up using v 2.2.6? — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#348 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ABK4ACFHHPLTEYZLK4XDG4LTYVO6RANCNFSM42UEFHHA> .

[parsanayyara]

Ok, just tried using 2.2.6 instead. widget still not showing up, did I miss anything in my code? - I'm new to escher and jupyter, would really appreciate some help :)

[danolson1]

There are a lot of possible problems. I teach a Metabolic Engineering class to graduate students at Dartmouth College. I've attached the MS Word document that I use to help them get their environments set up as well as a Conda environment file. Give that a try and see how it goes.

…

-Dan

On Tue, Jul 20, 2021 at 8:48 AM parsanayyara ***@***.***> wrote: Ok, just tried using 2.2.6 instead. widget still not showing up, did I miss anything in my code? - I'm new to escher and jupyter, would really appreciate some help :) [image: image] <https://user-images.githubusercontent.com/77234398/126326737-df2ec48c-cbb4-4f90-8e06-3ba367a35d95.png> — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#348 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ABK4ACHUYHNAYQFREDD7KMTTYVWDTANCNFSM42UEFHHA> .

[parsanayyara]

That would be really helpful! Thank you so much. Although I can't seem to find the attachment.. @danolson1

[danolson1]

me21_v5.zip
See if this works.

[parsanayyara]

Yep, it works for me! I think the problem was probably in the conda set up. I seriously can't thank you enough!

[meono]

thanks for the help.
i've been struggling with it today after some jupyter updates.
I aslo had to install @jupyter-widgets/base before escher extension (otherwise, it wouldn't build) and reinstall @jupyter-widgets/jupyterlab-manager after escher extension.

[Bagzik]

Hi I am trying to set up per @danolson1 solution but the Jupyter lab build is failing, and the instructions do not work anymore. How can I set up an environment for escher in 2024?

[parsanayyara]

Still works for me. How is jupyter lab failing?