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Merge pull request #416 from yfukai/yfukai-readme-fix
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Update README.rst to fix issues
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yfukai authored Apr 3, 2024
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Expand Up @@ -86,19 +86,19 @@ Please see the Usage_ for details.
The example notebooks are provided in `docs/examples <https://github.com/yfukai/laptrack/tree/main/docs/examples>`_.


================================= ============================================================================================ ======================
notebook name short description Google Colaboratory
--------------------------------- -------------------------------------------------------------------------------------------- ----------------------
`api_example.ipynb`_ Introducing the package API by a simple example. |colab|
--------------------------------- -------------------------------------------------------------------------------------------- ----------------------
`bright_spots.ipynb`_ Application example: detecting bright spots by scikit-image `blob_log` and tracking them.
--------------------------------- -------------------------------------------------------------------------------------------- ----------------------
`cell_segmentation.ipynb`_ Application example: tracking centroids of the segmented C2C12 cells undergoing divisions.
--------------------------------- -------------------------------------------------------------------------------------------- ----------------------
`napari_interactive_fix.ipynb`_ Illustrates the usage of the ground-truth-preserved tracking with `napari`.
--------------------------------- -------------------------------------------------------------------------------------------- ----------------------
`overlap_tracking.ipynb`_ Illustrates the usage of the custom metric to use segmentation overlaps for tracking.
================================= ============================================================================================ ======================
+--------------------------------+--------------------------------------------------------------------------------------------+----------------------+
| notebook name | short description | Google Colaboratory |
+================================+============================================================================================+======================+
| `api_example.ipynb`_ | Introducing the package API by a simple example. ||colab| |
+--------------------------------+--------------------------------------------------------------------------------------------+----------------------+
| `bright_spots.ipynb`_ | Application example: detecting bright spots by scikit-image `blob_log` and tracking them. | |
+--------------------------------+--------------------------------------------------------------------------------------------+----------------------+
| `cell_segmentation.ipynb`_ | Application example: tracking centroids of the segmented C2C12 cells undergoing divisions. | |
+--------------------------------+--------------------------------------------------------------------------------------------+----------------------+
| `napari_interactive_fix.ipynb`_| Illustrates the usage of the ground-truth-preserved tracking with `napari`. | |
+--------------------------------+--------------------------------------------------------------------------------------------+----------------------+
| `overlap_tracking.ipynb`_ | Illustrates the usage of the custom metric to use segmentation overlaps for tracking. | |
+--------------------------------+--------------------------------------------------------------------------------------------+----------------------+

.. _api_example.ipynb: https://github.com/yfukai/laptrack/tree/main/docs/examples/api_example.ipynb
.. _bright_spots.ipynb: https://github.com/yfukai/laptrack/tree/main/docs/examples/bright_spots.ipynb
Expand Down Expand Up @@ -155,7 +155,7 @@ Citation

If you use this program for your research, please cite it and help us build more.

.. code-block:: bib
.. code-block::
@article{fukai_2022,
title = {{{LapTrack}}: Linear Assignment Particle Tracking with Tunable Metrics},
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