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Implements #1322 and #1465 (#436)
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* #1403 fixed timer when services are not available

* #1389 applied tag.hidden logic, reduced autohide time for tags toasts to 5 seconds

* Squashed commit of the following:

commit 7511b57
Author: Boris Kovar <boris.kovar@m2ms.sk>
Date:   Tue Apr 23 08:27:24 2024 +0200

    - finished #1348

commit 6074d79
Author: Boris Kovar <boris.kovar@m2ms.sk>
Date:   Wed Apr 17 09:50:06 2024 +0200

    - #1348 - fixed cases when all pdbs are missing

commit 49f0ae8
Author: Boris Kovar <boris.kovar@m2ms.sk>
Date:   Wed Apr 10 13:41:50 2024 +0200

    - checkpoint

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Author: Boris Kovar <boris.kovar@m2ms.sk>
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commit a5b8cca
Merge: 34b75f7 756a25b
Author: Boris Kovar <boris.kovar@m2ms.sk>
Date:   Mon Mar 25 12:24:01 2024 +0100

    Merge branch '#1348' of https://github.com/m2ms/fragalysis-frontend into #1348

commit 34b75f7
Author: Boris Kovar <boris.kovar@m2ms.sk>
Date:   Tue Mar 12 12:35:21 2024 +0100

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Author: Boris Kovar <boris.kovar@m2ms.sk>
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commit 756a25b
Merge: f686ef4 f474ff6
Author: Boris Kovar <boris.kovar@m2ms.sk>
Date:   Thu Mar 14 10:00:02 2024 +0100

    Merge branch '#1348' of https://github.com/m2ms/fragalysis-frontend into #1348

commit f686ef4
Author: Boris Kovar <boris.kovar@m2ms.sk>
Date:   Tue Mar 12 12:35:21 2024 +0100

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Author: Boris Kovar <boris.kovar@m2ms.sk>
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Author: Boris Kovar <boris.kovar@m2ms.sk>
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Author: Boris Kovar <boris.kovar@m2ms.sk>
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Author: Boris Kovar <boris.kovar@m2ms.sk>
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commit f474ff6
Merge: 56c0b85 e728f49
Author: Boris Kovar <boris.kovar@m2ms.sk>
Date:   Thu Mar 14 08:30:00 2024 +0100

    Merge branch '#1348' of https://github.com/m2ms/fragalysis-frontend into #1348

    # Conflicts:
    #	js/components/preview/tags/details/tagDetails.js

commit 56c0b85
Author: Boris Kovar <boris.kovar@m2ms.sk>
Date:   Tue Feb 27 09:23:04 2024 +0100

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Author: Boris Kovar <boris.kovar@m2ms.sk>
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Author: Boris Kovar <boris.kovar@m2ms.sk>
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Author: Boris Kovar <boris.kovar@m2ms.sk>
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Author: Boris Kovar <boris.kovar@m2ms.sk>
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Author: Boris Kovar <boris.kovar@m2ms.sk>
Date:   Mon Feb 26 08:42:49 2024 +0100

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commit 2fb59dc
Author: Boris Kovar <boris.kovar@m2ms.sk>
Date:   Tue Mar 12 09:48:51 2024 +0100

    - using official backend version

commit 9439f5d
Author: Boris Kovar <boris.kovar@m2ms.sk>
Date:   Thu Mar 7 13:59:03 2024 +0100

    - partial fix for purple release for #1370

commit 4ff5f94
Author: Boris Kovar <boris.kovar@m2ms.sk>
Date:   Thu Mar 7 10:10:41 2024 +0100

    - implemented #1376
    - also fixed bug in download structures dialog where only first download got added to the dropdown menu

commit 66a98f3
Author: Boris Kovar <boris.kovar@m2ms.sk>
Date:   Wed Mar 6 09:47:12 2024 +0100

    - implemented #1361
    - improvements for #1354

commit 8a193a5
Author: Boris Kovar <boris.kovar@m2ms.sk>
Date:   Tue Mar 5 13:24:11 2024 +0100

    - cleanup for #1354

commit bb3bf3b
Author: Boris Kovar <boris.kovar@m2ms.sk>
Date:   Tue Mar 5 13:21:32 2024 +0100

    - updated message for #1354

commit a3dc819
Author: Boris Kovar <boris.kovar@m2ms.sk>
Date:   Tue Mar 5 13:05:12 2024 +0100

    - first implementation of #1354

commit 4121519
Author: Boris Kovar <boris.kovar@m2ms.sk>
Date:   Tue Mar 5 08:17:49 2024 +0100

    - implemented #1357

commit 4d96ff4
Author: Boris Kovar <boris.kovar@m2ms.sk>
Date:   Mon Mar 4 10:07:06 2024 +0100

    - implemented changes requested in #1326

commit 03158be
Author: Boris Kovar <boris.kovar@m2ms.sk>
Date:   Mon Mar 4 08:45:22 2024 +0100

    - fixed problem with tags not visually updating on observations

commit 8765a3c
Author: matej <matej.vavrek@m2ms.sk>
Date:   Mon Feb 26 21:36:12 2024 +0100

    #1341 "pin" edit tag row outside of tag list

commit 6db8b22
Author: Boris Kovar <boris.kovar@m2ms.sk>
Date:   Thu Feb 29 10:32:27 2024 +0100

    - checkpoint

commit 027eaf0
Author: Boris Kovar <boris.kovar@m2ms.sk>
Date:   Tue Feb 27 12:16:45 2024 +0100

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Author: Boris Kovar <boris.kovar@m2ms.sk>
Date:   Tue Feb 27 10:27:08 2024 +0100

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Author: Boris Kovar <boris.kovar@m2ms.sk>
Date:   Tue Feb 27 09:23:04 2024 +0100

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commit e39721c
Author: Boris Kovar <boris.kovar@m2ms.sk>
Date:   Mon Feb 26 08:42:49 2024 +0100

    - checkpoint

* - using official backend now

* Squashed commit of the following:

commit 8fe886a
Author: Boris Kovar <boris.kovar@m2ms.sk>
Date:   Wed May 15 09:00:04 2024 +0200

    Squashed commit of the following:

    commit 6813219
    Author: matej <matej.vavrek@m2ms.sk>
    Date:   Mon Apr 29 07:38:30 2024 +0200

        #1261 added icon for "Manage grouping" button

    commit a665ed5
    Author: matej <matej.vavrek@m2ms.sk>
    Date:   Sun Apr 28 23:23:25 2024 +0200

        #1261 added buttons into observation dialog for later poses handling

commit 70a5e70
Author: Boris Kovar <boris.kovar@m2ms.sk>
Date:   Mon Apr 29 09:20:46 2024 +0200

    - #1261 - initial implementation

* - now FE point to local dev env

* - pointing to correct backend

* - #1440 implemented fix

* fixed tag reset in edit modal

* added better default values handling in tag edit modal

* Squashed commit of the following:

commit 6813219
Author: matej <matej.vavrek@m2ms.sk>
Date:   Mon Apr 29 07:38:30 2024 +0200

commit a665ed5
Author: matej <matej.vavrek@m2ms.sk>
Date:   Sun Apr 28 23:23:25 2024 +0200

* #1393 - small bug fix for csv name

* - implementation of #1441

* Squashed commit of the following:

commit e68fab1
Author: Boris Kovar <boris.kovar@m2ms.sk>
Date:   Mon Jun 10 13:56:06 2024 +0200

    - optimized snapshot creation
    - optimized snapshot restoration
    - fixed bugs when switching between snapshots in one project

* #1322 main redesign of hits and observations views

* #1322 changed min width of lhs

* #1322 count also tags without curator tags as untagged

* #1322 remove selected tag if was set as hidden

* #1465 updated companies in credits and logic behind for better manageability

* #1465 changed some logos for bigger ones, added tooltip also for header logos, removed duplicate of openDiscourseLink

* increased font size of mui tooltip

* #1322 updated tooltip of tag info boxes with tag upload name

* #1465 changed naming IMAGE_SIZE to MAX_IMAGE_HEIGHT to be more descriptive

---------

Co-authored-by: matej <matej.vavrek@m2ms.sk>
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227 changes: 227 additions & 0 deletions js/components/funders/constants.js
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Original file line number Diff line number Diff line change
@@ -0,0 +1,227 @@
/**
* Get image for src from \js\img\logos
*
* @param {string} image image file name
* @returns
*/
export const get_logo = image => {
return require('../../img/logos/' + image);
}

/**
* List of companies with their definitions
*/
export const COMPANIES = {
diamond: {
title: 'Diamond Light Source',
link: 'https://www.diamond.ac.uk/Home.html',
image: 'dlsLogo.png'
},
asap: {
title: 'AI-driven Structure-enabled Antiviral Platform',
link: 'https://asapdiscovery.org/',
image: 'asapLogo.png'
},
xchem: {
title: 'XChem',
link: 'https://www.diamond.ac.uk/Instruments/Mx/Fragment-Screening.html',
image: 'xchemLogo.png'
},
fragmentScreen: {
title: 'Fragment-Screen',
link: 'https://fragmentscreen.org/home',
image: 'fragmentScreenLogo.png'
},
sgc: {
title: 'Structural Genomics Consortium',
link: 'https://www.thesgc.org/',
image: 'sgcLogo.png'
},
iris: {
title: 'IRIS',
link: 'https://www.iris.ac.uk/',
image: 'irisLogo.png'
},
niaid: {
title: 'National Institute of Allergy and Infectious Diseases',
link: 'https://www.niaid.nih.gov/',
image: 'niaidLogo.svg'
},
iEric: {
title: 'Instruct-ERIC',
link: 'https://instruct-eric.org/',
image: 'iEricLogo.png'
},
alc: {
title: 'Ada Lovelace Center',
link: 'https://adalovelacecentre.ac.uk/',
image: 'alcLogo.png'
},
ukRI: {
title: 'UK Research and Innovation',
link: 'https://www.ukri.org/',
image: 'ukRILogo.png'
},
inext: {
title: 'iNEXT-Discovery',
link: 'https://inext-discovery.eu/',
image: 'inextLogo2.png'
},
jff: {
title: 'John Fell Fund',
link: 'https://researchsupport.admin.ox.ac.uk/funding/internal/jff',
image: 'jffLogo.jpg'
},
newtonfund: {
title: 'Newton Fund',
link: 'https://www.newtonfund.ac.uk/',
image: 'nfLogo.png'
},
wellcomeTrust: {
title: 'Institutional Strategic Support Fund',
link: 'https://wellcome.org/grant-funding/funded-people-and-projects/institutional-strategic-support-fund',
image: 'wtLogo.png'
},
wellcome: {
title: 'Wellcome',
link: 'https://wellcome.org',
image: 'welcomeLogo.png'
},
ultradd: {
title: 'Unrestricted Leveraging of Targets for Research Advancement and Drug Discovery',
link: 'https://ultra-dd.org/',
image: 'ultraddLogo.png'
},
imi: {
title: 'Innovative Medicines Initiative',
link: 'https://www.imi.europa.eu/',
image: 'imiLogo.png'
},
ukRIstfc: {
title: 'Science and Technology Facilities Council',
link: 'https://www.ukri.org/councils/stfc/',
image: 'ukRIstfcLogo.png'
},
rosetrees: {
title: 'Rosetrees',
link: 'https://rosetrees.org.uk/',
image: 'rosetreesLogo.png'
},
eu: {
title: 'European Union',
link: 'https://european-union.europa.eu/live-work-study/funding-grants-subsidies_en',
image: 'euLogo.png'
},
eubopen: {
title: 'EUbOPEN',
link: 'https://www.eubopen.org/',
image: 'eubopenLogo.png'
},
harwell: {
title: 'The Research Complex at Harwell',
link: 'https://www.ukri.org/who-we-are/mrc/institutes-units-and-centres/the-research-complex-at-harwell/',
image: 'harwellLogo.png'
},
sabs: {
title: 'SABS R³',
link: 'https://www.sabsr3.ox.ac.uk/home',
image: 'sabsLogo.png'
},
cmd: {
title: 'Centre for Medicines Discovery',
link: 'https://www.cmd.ox.ac.uk/',
image: 'cmdLogo.png'
},
opig: {
title: 'Oxford Protein Informatics Group',
link: 'https://opig.stats.ox.ac.uk/',
image: 'opigLogo.png'
},
horizon: {
title: 'Horizon 2020',
link: 'https://ec.europa.eu/programmes/horizon2020/',
image: 'horizon2020Logo.jpg'
},
janssen: {
title: 'Janssen',
link: 'https://www.janssen.com/',
image: 'janssenLogo.png'
},
m2ms: {
title: 'M2M Solutions',
link: 'https://www.en.m2ms.sk/',
image: 'm2msLogo.png'
},
informaticsmatters: {
title: 'Informatics Matters',
link: 'https://www.informaticsmatters.com/',
image: 'informaticsLogo.svg'
},
// company: {
// link: 'https://www.acellera.com/',
// image:
// },
// company: {
// link: 'https://www.rse.ox.ac.uk/',
// image:
// },
// company: {
// link: 'https://www.molsoft.com/',
// image:
// },
moonshot: {
title: 'COVID Moonshot',
link: 'https://covid.postera.ai/covid',
image: 'covidMoonshotLogo.png'
},
mrc: {
title: 'Medical Research Council',
link: 'https://mrc.ukri.org/',
image: 'mrcLogo.png'
}
};

/**
* Companies listed in funding section
*/
export const FUNDING = [
COMPANIES.diamond,
COMPANIES.asap,
COMPANIES.fragmentScreen,
COMPANIES.ultradd,
COMPANIES.sgc,
COMPANIES.iris,
COMPANIES.niaid,
COMPANIES.iEric,
COMPANIES.janssen,
COMPANIES.wellcomeTrust,
COMPANIES.alc,
COMPANIES.wellcome,
COMPANIES.ukRI,
COMPANIES.imi,
COMPANIES.jff,
COMPANIES.ukRIstfc,
COMPANIES.rosetrees,
COMPANIES.eu,
COMPANIES.eubopen,
COMPANIES.newtonfund,
COMPANIES.harwell,
COMPANIES.sabs,
COMPANIES.inext,
COMPANIES.horizon,
COMPANIES.mrc
];

/**
* Companies listed in contributors section
*/
export const CONTRIBUTORS = [
COMPANIES.xchem,
COMPANIES.m2ms,
COMPANIES.informaticsmatters,
COMPANIES.cmd,
COMPANIES.opig,
COMPANIES.sabs,
COMPANIES.moonshot,
COMPANIES.janssen
];
16 changes: 8 additions & 8 deletions js/components/funders/fundersHolder.js
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Expand Up @@ -46,42 +46,42 @@ class FundersHolder extends PureComponent {
<Grid container>
<Grid item xs={4} md={4}>
<div className="text-center">
<img src={require('../../img/xchemLogo.png')} width={logoWidth} onClick={this.openXchem} />
<img src={require('../../img/logos/xchemLogo.png')} width={logoWidth} onClick={this.openXchem} />
</div>
</Grid>
<Grid item xs={4} md={4}>
<div className="text-center">
<img src={require('../../img/dlsLogo.png')} width={logoWidth} onClick={this.openDls} />
<img src={require('../../img/logos/dlsLogo.png')} width={logoWidth} onClick={this.openDls} />
</div>
</Grid>
<Grid item xs={4} md={4}>
<div className="text-center">
<img src={require('../../img/sgcLogo.png')} width={logoWidth} onClick={this.openSgc} />
<img src={require('../../img/logos/sgcLogo.png')} width={logoWidth} onClick={this.openSgc} />
</div>
</Grid>
<Grid item xs={4} md={4}>
<div className="text-center">
<img src={require('../../img/mrcLogo.png')} width={logoWidth} onClick={this.openMrc} />
<img src={require('../../img/logos/mrcLogo.png')} width={logoWidth} onClick={this.openMrc} />
</div>
</Grid>
<Grid item xs={4} md={4}>
<div className="text-center">
<img src={require('../../img/wtLogo.png')} width={logoWidth} onClick={this.openWt} />
<img src={require('../../img/logos/wtLogo.png')} width={logoWidth} onClick={this.openWt} />
</div>
</Grid>
<Grid item xs={4} md={4}>
<div className="text-center">
<img src={require('../../img/inextLogo.png')} width={logoWidth} onClick={this.openInext} />
<img src={require('../../img/logos/inextLogo.png')} width={logoWidth} onClick={this.openInext} />
</div>
</Grid>
<Grid item xs={4} md={4}>
<div className="text-center">
<img src={require('../../img/jffLogo.jpg')} width={logoWidth} onClick={this.openJff} />
<img src={require('../../img/logos/jffLogo.jpg')} width={logoWidth} onClick={this.openJff} />
</div>
</Grid>
<Grid item xs={4} md={4}>
<div className="text-center">
<img src={require('../../img/nfLogo.png')} width={logoWidth} onClick={this.openNf} />
<img src={require('../../img/logos/nfLogo.png')} width={logoWidth} onClick={this.openNf} />
</div>
</Grid>
</Grid>
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