Backend of Easy Genome Aligner

Caution: Parts of UCSC's pipeline don't work correctly under macOS.

Examples

• Procedures of full UCSC multiple genome alignments.
  • Batch processing two S. cerevisiae strains
  • Detailed/alternative steps for two S. cerevisiae strains
• Procedures of whole genome self alignments for finding segment duplications (and partial WGD).
  • S. cerevisiae reference strain S288c
  • A. thaliana

Workflows

• Workflow of multiply alignments

• Workflow of self alignments