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Update NEWS.md
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vincentvanhees committed Jan 23, 2025
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- Part 2:

- Fix bug in determining the number of files to be included in the part 2 report. This does not affect subsequent GGIR parts but does affect the part 2 report which may have had less recordings than expected. #1252
- Fix bug in determining the number of files to be included in the part 2 report. It may affect the part 2 csv report which may have had less recordings than expected even though the missing recordings are just processed and visible in the output of subsequent parts. #1252

- Speed up activity diary extraction. #1250

- Make sure event diary is saved to csv with intended sep and dec arguments rather than default.
- Make sure part 2 event report, e.g. based on step detection, is saved to csv format with intended sep and dec arguments rather than default.

- Simplify MVPA parameter specification in part 2 (mvpathreshold, boutcriter) by copying values from corresponding parameters in part 5 (threshold.mod and boutcriter.mvpa) if not specified. #1247
- Simplify MVPA parameter specification in part 2 (mvpathreshold, boutcriter). When not specified GGIR copies the corresponding part 5 parameter values (threshold.mod and boutcriter.mvpa). #1247

- Part 2 and 4: Both activity diary and sleep diary are now always reloaded if the derived copy of it (in .RData) is older than the diary itself. #1250

- Visual report: Recently added visual report is now also able to handle recordings with only 1 valid data, these were previously skipped. #1246

- Part 4:

- Improvements to handling dates in sleeplog as a follow-up to work on #1243
- Improvements to handling dates in sleeplog as a follow-up to work on #1243 in the previous release.

- Added warning when there are two accelerometer recordings with the same ID.
- Added warning when there are two accelerometer recordings with the same participant ID.

- Change extraction of imputation code from sleep diary, which is now assumed to correspond to preceding night. This is now also documented. #1251
- Change extraction of imputation code from sleep diary, which is now assumed to correspond to preceding night. #1251

- Part 1, 5 and 6:

- Update code to be backward compatible with R 4.2.0
- Part 1, 5 and 6: Update code to be backward compatible with R 4.2.0

# CHANGES IN GGIR VERSION 3.1-10

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- In days classified as daysleeper, the window over which the fraction_night_invalid is calculated now also shifts to 6pm-6pm, as it used to report the nonwear within 12pm-12pm.

- Vignette: Document that missing dates can be skipped i advanced format sleeplog
- Vignette: Now documented that missing dates can be skipped in advanced format sleeplog.

- Step detection: Include R script for Verisense step detection inside GitHub repository 'user-scripts' folder to ease future maintenance.

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- Part 2: Add parameters nonwearFiltermaxHours and nonwearFilterWindow to give user the option to filter short lasting nighttime nonwear #1218.

- Part 5 and 6: part6_threshold_combi when not specified now defaults to first threshold as
specified for light, moderate and vigorous intensity respectively.
specified for light, moderate and vigorous intensity, respectively.

# CHANGES IN GGIR VERSION 3.1-7

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- Moving LXMX from part 5 to part 6 as these are circadian rhythm analysis.

- Omitted fragmentation metrics for spt window as not meaningful given that part 5 only focusses on valid daytime behaviours.
- Omitted fragmentation metrics for spt window as not meaningful given that part 5 only focuses on valid daytime behaviours.

- includenightcrit.part5 added to allow for controlling inclusion of windows in part 5 based on their amount of valid data during spt window. Default remains the same.

- Fix incorrect usage of part 5 inclusion criteria testing, which used fraction as percentage.
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