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Run WGCNA analysis with WGBS and mRNA count matrices #13

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AHuffmyer opened this issue Feb 7, 2025 · 2 comments

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AHuffmyer commented Feb 7, 2025

@sr320 please post links on Gannet to WGBS count data made today

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sr320 commented Feb 8, 2025 via email

“Processed” files @ https://gannet.fish.washington.edu/seashell/bu-github/timeseries_molecular/D-Apul/output/15.5-Apul-bismark/

On Fri, Feb 7, 2025 at 12:06 PM Ariana S Huffmyer ***@***.***> wrote: Assigned #13 <https://urldefense.com/v3/__https://github.com/urol-e5/timeseries_molecular/issues/13__;!!K-Hz7m0Vt54!icb1fJ0Ma4iB3D3RY37kMQNyMU9pFO_NmVBb9IIFoNX-hSPpNDEDlSH7r6Smi3t81UW6E5AAGOZ2aGpmRLXwkzE$> to @sr320 <https://urldefense.com/v3/__https://github.com/sr320__;!!K-Hz7m0Vt54!icb1fJ0Ma4iB3D3RY37kMQNyMU9pFO_NmVBb9IIFoNX-hSPpNDEDlSH7r6Smi3t81UW6E5AAGOZ2aGpmvI1STiQ$> . — Reply to this email directly, view it on GitHub <https://urldefense.com/v3/__https://github.com/urol-e5/timeseries_molecular/issues/13*event-16229790689__;Iw!!K-Hz7m0Vt54!icb1fJ0Ma4iB3D3RY37kMQNyMU9pFO_NmVBb9IIFoNX-hSPpNDEDlSH7r6Smi3t81UW6E5AAGOZ2aGpmSihvTPg$>, or unsubscribe <https://urldefense.com/v3/__https://github.com/notifications/unsubscribe-auth/ABB4PN3QQXS4PX3EKJ7VLQD2OUG4TAVCNFSM6AAAAABWWWRUQGVHI2DSMVQWIX3LMV45UABCJFZXG5LFIV3GK3TUJZXXI2LGNFRWC5DJN5XDWMJWGIZDSNZZGA3DQOI__;!!K-Hz7m0Vt54!icb1fJ0Ma4iB3D3RY37kMQNyMU9pFO_NmVBb9IIFoNX-hSPpNDEDlSH7r6Smi3t81UW6E5AAGOZ2aGpmsDKbJGo$> . You are receiving this because you were assigned.Message ID: ***@***.***>

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AHuffmyer commented Feb 15, 2025

Draft first pass of the analysis done - results are pretty cool!

https://ahuffmyer.github.io/ASH_Putnam_Lab_Notebook/E5-timeseries-multiomic-WGCNA-Part-1/

AHuffmyer closed this as completed

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