02‐Sequencing Read Data

Jump to bottom

kubu4 edited this page Feb 10, 2025 · 5 revisions

A. pulchra

sub-effort D

RAW

RNA-seq:

https://owl.fish.washington.edu/nightingales/A_pulchra/30-789513166/
- Sequencing report: Azenta_30-789513166_Data_Report.html

sRNA-seq:

https://owl.fish.washington.edu/nightingales/A_pulchra/30-852430235/
- FastQ prefix: sRNA-

WGBS:

https://owl.fish.washington.edu/nightingales/E5-coral-deep-dive-expression/genohub2216545/
- FastQ prefix:
```
413_
423_
427_
439_
467_
```
- NOTE: These get renamed for downstream project naming consistency to <col_id>-<timepoint>_* in 00.00-D-Apul-WGBS-reads-FastQC-MultiQC.md
multiqc_report.html

TRIMMED

RNA-seq:

https://gannet.fish.washington.edu/Atumefaciens/20230519-E5_coral-fastqc-fastp-multiqc-RNAseq/A_pulchra/trimmed/
- Trimming details

sRNA-seq:

20230620-E5_coral-fastqc-flexbar-multiqc-sRNAseq/A_pulchra/trimmed/
- Trimming details

WGBS:

https://gannet.fish.washington.edu/gitrepos/urol-e5/deep-dive-expression/D-Apul/output/01.00-D-Apul-WGBS-trimming-fastp-FastQC-MultiQC/trimmed-fastqs/
- Trimming details
- multiqc_report.html

P. evermanni

sub-effort E

RAW

RNA-seq:

https://owl.fish.washington.edu/nightingales/P_evermanni/30-789513166/
- Sequencing report: Azenta_30-789513166_Data_Report.html

sRNA-seq:

https://owl.fish.washington.edu/nightingales/P_evermanni/30-852430235/
- FastQ prefix: sRNA-

WGBS:

https://owl.fish.washington.edu/nightingales/E5-coral-deep-dive-expression/genohub2216545/
- FastQ prefix:
```
471_
491_
421_
487_
489_
```
- NOTE: These get renamed for downstream project naming consistency to <col_id>-<timepoint>_* in 00.00-E-Peve-WGBS-reads-FastQC-MultiQC.md
multiqc_report.html

TRIMMED

RNA-seq:

https://gannet.fish.washington.edu/Atumefaciens/20230519-E5_coral-fastqc-fastp-multiqc-RNAseq/P_evermanni/trimmed/
- Trimming details

sRNA-seq:

https://gannet.fish.washington.edu/Atumefaciens/20230620-E5_coral-fastqc-flexbar-multiqc-sRNAseq/P_evermanni/trimmed/
- Trimming details

WGBS:

https://gannet.fish.washington.edu/gitrepos/urol-e5/deep-dive-expression/E-Peve/output/01.00-E-Peve-WGBS-trimming-fastp-FastQC-MultiQC/trimmed-fastqs/
- Trimming details
- multiqc_report.html

P.tuahiniensis (previously referred to as P. meandrina)

sub-effort F

RAW

RNA-seq:

https://owl.fish.washington.edu/nightingales/P_meandrina/30-789513166/
- Sequencing report: Azenta_30-789513166_Data_Report.html

sRNA-seq:

https://owl.fish.washington.edu/nightingales/P_meandrina/30-852430235/
- FastQ prefix: sRNA-

WGBS:

https://owl.fish.washington.edu/nightingales/E5-coral-deep-dive-expression/genohub2216545/
- FastQ prefix:
```
403_
417_
385_
393_
401_
```
- NOTE: These get renamed for downstream project naming consistency to <col_id>-<timepoint>_* in 00.00-F-Ptuh-WGBS-reads-FastQC-MultiQC.md
multiqc_report.html

TRIMMED

RNA-seq:

https://gannet.fish.washington.edu/Atumefaciens/20230519-E5_coral-fastqc-fastp-multiqc-RNAseq/P_meandrina/trimmed/
- Trimming details

sRNA-seq:

https://gannet.fish.washington.edu/Atumefaciens/20230620-E5_coral-fastqc-flexbar-multiqc-sRNAseq/P_meandrina/trimmed/
- Trimming details

WGBS:

https://gannet.fish.washington.edu/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/output/01.00-F-Ptuh-WGBS-trimming-fastp-FastQC-MultiQC/trimmed-fastqs/
- Trimming details
- multiqc_report.html