Fixing benchmarks

[wenqing]

There are several benchmarks failed with the open source code of ogs5. This PR is aimed to fix the failed benchmarks that are listed below:

• AKS-H_us/RSM/AT_5 (Failed)
• BG-ECLIPSE_DUMUX/kinetic_CO2phase_generation_E100/CO2phase_gen_E100 (Failed)
• BG-ECLIPSE_DUMUX/kinetic_CO2phase_generation_E300/CO2phase_gen_E300 (Failed)
• JOD-OVERLAND_FLOW/gian_quad (Failed)
• MW-DENSITY-DEPENDENT_FLOW/goswami-clement/constrBC_PressAsHead_tri/HM (Failed)
• MW-DENSITY-DEPENDENT_FLOW/goswami-clement/wholeBC_PressAsHead_tri/HM (Failed)
• UJG-HM/hm_cc_tri_s (Failed)
• UJG-M/creep/m_crp_tri (Failed)
• UJG-HM/hm_foot_tet (Failed)
• YS-RWPT/Harter/colloid_t (Failed)
• YS-RWPT/3DGrain/3d_grain (Failed)
• YS-RWPT/HomoCube/3DRWPTCubTet (Failed)
• YS-RWPT/Forchheimer/forchheimer_rwpt (Failed)

Those need freeqc

• BG-C/2d_Cl_transport_Clay/Nuklidtransport (Failed)
• CB-C/Engesgaard/Kin/slow_kin_pqc/pds (Failed)
• CB-C/Engesgaard/Kin/slow_kin_pqc_krc/pds (Failed)
• CB-C/NAPL-dissolution/1D_NAPL-diss_flow/lin/1D_TPF_resS_flow (Failed)

[wenqing]

@bilke This commit fixes five benchmarks. The problem in SY_RWPT is that the result files with the name extension of .particles.vtk are not saved in the building directory but in the directory of their input data. Would you please check this? The mentioned file name is declared here:
https://github.com/wenqing/ogs5/blob/fix_benchmarks/FEM/rf_random_walk.cpp#L6128

[bilke]

I will have a look..

[wenqing]

@bilke The vtk files of SY_RWPT are for particles. Maybe the file name extension of vtk is missing in cmake comparison function.

[bilke]

@wenqing Maybe this works:

string vtk_file_name = pathJoin(defaultOutputPath, FileName);

See Christophs PR for details.

[wenqing]

@bilke It works with your suggestion. Thanks.

[wenqing]

YS-RWPT fixed.

[wenqing]

@WaltherM Could you please check the results of

• MW-DENSITY-DEPENDENT_FLOW/goswami-clement/constrBC_PressAsHead_tri/HM (Failed)
• MW-DENSITY-DEPENDENT_FLOW/goswami-clement/wholeBC_PressAsHead_tri/HM (Failed)
  ?

The two benchmarks run but their results need to be confirmed.
The source code is in
https://github.com/ufz/ogs5
and the input data can be fetched from
https://github.com/ufz/ogs5-benchmarks

[hydromarc]

I'm taking a look...

@wenqing both benchmarks produce the same results for me. I used the latest develop version from the old, internal repo vs this new one.