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GTF source not written to index files #759

Merged
merged 1 commit into from
Jul 4, 2023
Merged

GTF source not written to index files #759

merged 1 commit into from
Jul 4, 2023

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zhuchcn
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@zhuchcn zhuchcn commented Jul 4, 2023

Description

Closes #758

Checklist

  • This PR does NOT contain PHI or germline genetic data. A repo may need to be deleted if such data is uploaded. Disclosing PHI is a major problem.
  • This PR does NOT contain molecular files, compressed files, output files such as images (e.g. .png, .jpeg), .pdf, .RData, .xlsx, .doc, .ppt, or other non-plain-text files. To automatically exclude such files using a .gitignore file, see here for example.
  • I have read the code review guidelines and the code review best practice on GitHub check-list.
  • The name of the branch is meaningful and well formatted following the standards, using [AD_username (or 5 letters of AD if AD is too long)]-[brief_description_of_branch].
  • I have added the major changes included in this pull request to the CHANGELOG.md under the next release version or unreleased, and updated the date.
  • All test cases passed locally.

@zhuchcn zhuchcn requested a review from lydiayliu July 4, 2023 19:29
lydiayliu
lydiayliu approved these changes Jul 4, 2023
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test/files/annotation_gene.idx
##python=3.8.17
##moPepGen=1.1.0
##biopython=1.81
ENSG00000128408.9 0 174 ENST00000614168.2,ENST00000614167.2
ENSG00000128408.9 0 174 ENST00000614167.2,ENST00000614168.2
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why did you change this lol

@lydiayliu lydiayliu merged commit 8cdca92 into main Jul 4, 2023
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@lydiayliu lydiayliu lydiayliu approved these changes

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Annotation source None not supported
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@zhuchcn @lydiayliu