Added Support for Fusion into the Graph Algorithm #4
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…after alignment. Also updated test files
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The graph algorithm now supports fusion by inserting a subgraph of the donor transcript into the acceptor's transcript graph at the breakpoints. Parsers haven't been implemented in this PR at this point, because the acceptor of a fusion event could be an untranslatable gene (e.g. lncRNA). So the '3-frame searching' needs to be implemented before we can implement parsers for the output of any fusion caller.
@lydiayliu I know you are on vaccation. This is more like a milestone of the project to keep track on the development history. Going to merge it into main right away.