Correct the agg reducers (#247)

* fix(reducer): correct the agg reducers * fix tests failed
uc-cdis · Nov 6, 2023 · 9265477 · 9265477
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diff --git a/...671-bb2d-5f4448bdd262-c000.snappy.parquet → ...968-b23c-2c3685369cdb-c000.snappy.parquet b/...671-bb2d-5f4448bdd262-c000.snappy.parquet → ...968-b23c-2c3685369cdb-c000.snappy.parquet
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diff --git a/...714-8e18-ac65369a709b-c000.snappy.parquet → ...fa5-a002-8eef7f0d6566-c000.snappy.parquet b/...714-8e18-ac65369a709b-c000.snappy.parquet → ...fa5-a002-8eef7f0d6566-c000.snappy.parquet
diff --git a/tests/dataframe_tests/test_data/ibdgc/graphs/node_rawsnpgenotype/part-m-00000 b/tests/dataframe_tests/test_data/ibdgc/graphs/node_rawsnpgenotype/part-m-00000
@@ -107,7 +107,6 @@
 "2020-01-17 06:02:21.920928+00","{phs-jenkins,jnkns}","{}","{""state"": ""validated"", ""md5sum"": ""9a44404f79dc6f4a703a3c920cb8168d"", ""data_type"": ""SNP Intensities and/or Called Genotypes"", ""file_name"": ""3d9cba6023"", ""file_size"": 82, ""object_id"": ""dg.XXXX/96a8bdbb-ffe6-4b73-85d8-077113ba4cc8"", ""file_state"": ""registered"", ""project_id"": ""jnkns-jenkins"", ""data_format"": ""IDAT"", ""assay_method"": ""SNP Array"", ""submitter_id"": ""raw_snp_genotype_089cfcb3b9"", ""data_category"": ""SNP Genotypes"", ""assay_instrument"": ""Illumina"", ""created_datetime"": ""2020-01-17T06:02:21.920928+00:00"", ""updated_datetime"": ""2020-01-17T06:02:21.920928+00:00"", ""assay_instrument_model"": ""Illumina Infinium Global Screening Array-24 v2.0""}","6ee014e3-08fd-4793-be6d-efceea9f1c85"
 "2020-01-17 06:02:25.486043+00","{phs-jenkins,jnkns}","{}","{""state"": ""validated"", ""md5sum"": ""35cc1c62ae485d5fd84d76efe1f1038f"", ""data_type"": ""SNP Intensities and/or Called Genotypes"", ""file_name"": ""374cc8f429"", ""file_size"": 45, ""object_id"": ""dg.XXXX/293ab724-5952-4894-b073-8bf8cdef7187"", ""file_state"": ""registered"", ""project_id"": ""jnkns-jenkins"", ""data_format"": ""Illumina Final Report"", ""assay_method"": ""SNP Array"", ""submitter_id"": ""raw_snp_genotype_0f7903f8b1"", ""data_category"": ""SNP Genotypes"", ""assay_instrument"": ""Illumina"", ""created_datetime"": ""2020-01-17T06:02:25.486043+00:00"", ""updated_datetime"": ""2020-01-17T06:02:25.486043+00:00"", ""assay_instrument_model"": ""Illumina Infinium Global Screening Array-24 v2.0""}","9b43176f-a5ff-449d-8809-98b009e223c6"
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 "2020-02-17 22:11:08.545392+00","{phs-jenkins,jnkns}","{}","{""type"": ""raw_snp_genotype"", ""state"": ""validated"", ""md5sum"": ""61a2dc1880f911805d52873c6d97c793"", ""samples"": [], ""data_type"": ""SNP Intensities and/or Called Genotypes"", ""file_name"": ""zoe"", ""file_size"": 21153942804, ""object_id"": ""dg.XXXX/420f68e3-dfc5-40f7-a488-429855128888"", ""file_state"": ""registered"", ""project_id"": ""jnkns-jenkins"", ""data_format"": ""Illumina Final Report"", ""assay_method"": ""SNP Array"", ""submitter_id"": ""raw_snp_genotype_bae932ddd9"", ""data_category"": ""SNP Genotypes"", ""state_comment"": ""zoe"", ""assay_instrument"": ""Illumina"", ""created_datetime"": ""2020-01-13T06:02:27.622894+00:00"", ""updated_datetime"": ""2020-01-13T06:02:27.622894+00:00"", ""assay_instrument_model"": ""Illumina Infinium Global Screening Array-24 v2.0"", ""core_metadata_collections"": [{""id"": ""df2fcfd1-b591-46af-85fb-3973e2915c60"", ""submitter_id"": ""core_metadata_collection_9f28aa40cc""}]}","07ce47b3-e3cf-4449-95e2-cd0f97f63333"
 "2021-01-08 19:06:21.543558+00","{phs-jenkins2,jnkns}","{}","{""state"": ""validated"", ""md5sum"": ""b77ec4ef33b0194bfff84fa84fd1ba17"", ""data_type"": ""SNP Intensities and/or Called Genotypes"", ""file_name"": ""ab3514fb8d"", ""file_size"": 47, ""object_id"": ""dg.XXXX/2540642a-1f7a-429e-941b-01179b46c987"", ""file_state"": ""registered"", ""project_id"": ""jnkns-jenkins2"", ""data_format"": ""PLINK BED File"", ""assay_method"": ""SNP Array"", ""submitter_id"": ""raw_snp_genotype_6c8561c54d"", ""data_category"": ""SNP Genotypes"", ""assay_instrument"": ""Illumina"", ""created_datetime"": ""2021-01-08T19:06:21.543558+00:00"", ""updated_datetime"": ""2021-01-08T19:06:21.543558+00:00"", ""assay_instrument_model"": ""Illumina Infinium Global Screening Array-24 Kit v2.0 BeadChip""}","db5edc3a-9d40-4f0c-98cd-fa81340a800d"
 "2021-01-08 19:06:21.953907+00","{phs-jenkins2,jnkns}","{}","{""state"": ""validated"", ""md5sum"": ""ad7d1b0fc5b2d142a49708f5e5e255bb"", ""data_type"": ""SNP Intensities and/or Called Genotypes"", ""file_name"": ""b9473dc19b"", ""file_size"": 38, ""object_id"": ""dg.XXXX/d3f6e0fb-9b14-406d-b7ec-8cfbde1e5f26"", ""file_state"": ""registered"", ""project_id"": ""jnkns-jenkins2"", ""data_format"": ""IDAT"", ""assay_method"": ""SNP Array"", ""submitter_id"": ""raw_snp_genotype_87a3cdfdaa"", ""data_category"": ""SNP Genotypes"", ""assay_instrument"": ""Illumina"", ""created_datetime"": ""2021-01-08T19:06:21.953907+00:00"", ""updated_datetime"": ""2021-01-08T19:06:21.953907+00:00"", ""assay_instrument_model"": ""Illumina Infinium Global Screening Array-24 Kit v2.0 BeadChip""}","a4685a40-9e93-41ca-8282-55ddf0406148"
@@ -159,3 +158,4 @@
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diff --git a/tests/dataframe_tests/test_data/ibdgc/graphs/node_root/part-m-00000 b/tests/dataframe_tests/test_data/ibdgc/graphs/node_root/part-m-00000
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diff --git a/...__collected_collecting_dfs__case/_SUCCESS → ...anslator.ensure_project_id_exist/_SUCCESS b/...__collected_collecting_dfs__case/_SUCCESS → ...anslator.ensure_project_id_exist/_SUCCESS
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diff --git a/...to_dataframe__dataset/part-00000-60fd782a-6ad0-4e62-98cf-431507edb9a3-c000.snappy.parquet b/...to_dataframe__dataset/part-00000-60fd782a-6ad0-4e62-98cf-431507edb9a3-c000.snappy.parquet
diff --git a/...to_dataframe__dataset/part-00000-df5907bb-95a9-4e0b-9782-f0c10752156e-c000.snappy.parquet b/...to_dataframe__dataset/part-00000-df5907bb-95a9-4e0b-9782-f0c10752156e-c000.snappy.parquet
diff --git a/...aframe__imaging_study/part-00000-7e898214-d669-40b1-b163-51224e14107c-c000.snappy.parquet b/...aframe__imaging_study/part-00000-7e898214-d669-40b1-b163-51224e14107c-c000.snappy.parquet
diff --git a/...aframe__imaging_study/part-00000-baabea81-7d85-45b7-bc5f-5dc85042db7b-c000.snappy.parquet b/...aframe__imaging_study/part-00000-baabea81-7d85-45b7-bc5f-5dc85042db7b-c000.snappy.parquet
diff --git a/...rame__imaging_study_1/part-00000-53add90f-b42c-49f1-9528-5149a219e2bd-c000.snappy.parquet b/...rame__imaging_study_1/part-00000-53add90f-b42c-49f1-9528-5149a219e2bd-c000.snappy.parquet
diff --git a/...rame__imaging_study_1/part-00000-c8a53179-ef42-4420-8620-92f2e52a72a5-c000.snappy.parquet b/...rame__imaging_study_1/part-00000-c8a53179-ef42-4420-8620-92f2e52a72a5-c000.snappy.parquet
diff --git a/...or.walk_through_graph/part-00000-4c87afae-4774-4f51-ad26-b150d8bc50dc-c000.snappy.parquet b/...or.walk_through_graph/part-00000-4c87afae-4774-4f51-ad26-b150d8bc50dc-c000.snappy.parquet
diff --git a/...or.walk_through_graph/part-00000-c028ce30-49c0-444c-8ae0-6ca59594b881-c000.snappy.parquet b/...or.walk_through_graph/part-00000-c028ce30-49c0-444c-8ae0-6ca59594b881-c000.snappy.parquet
diff --git a/...rame/imaging_study__1/part-00000-c05e5580-a046-4460-9b1a-3c7430642c75-c000.snappy.parquet b/...rame/imaging_study__1/part-00000-c05e5580-a046-4460-9b1a-3c7430642c75-c000.snappy.parquet
diff --git a/...rame/imaging_study__1/part-00000-d33ca366-6914-4f63-9420-f6e0584eec6c-c000.snappy.parquet b/...rame/imaging_study__1/part-00000-d33ca366-6914-4f63-9420-f6e0584eec6c-c000.snappy.parquet
diff --git a/...or.join_and_aggregate/part-00000-f27cdbb6-34e0-47a0-9d77-96aa78f6344d-c000.snappy.parquet b/...or.join_and_aggregate/part-00000-f27cdbb6-34e0-47a0-9d77-96aa78f6344d-c000.snappy.parquet
diff --git a/...or.join_and_aggregate/part-00000-fbb0ad60-43c6-492a-a0ef-2b1b8c183bd6-c000.snappy.parquet b/...or.join_and_aggregate/part-00000-fbb0ad60-43c6-492a-a0ef-2b1b8c183bd6-c000.snappy.parquet
diff --git a/...ator.join_to_an_index/part-00000-30db308a-d4da-491c-b0a5-8b8f2b221e97-c000.snappy.parquet b/...ator.join_to_an_index/part-00000-30db308a-d4da-491c-b0a5-8b8f2b221e97-c000.snappy.parquet
diff --git a/...ator.join_to_an_index/part-00000-e707f4c6-9193-4980-a74b-567a0acc1b92-c000.snappy.parquet b/...ator.join_to_an_index/part-00000-e707f4c6-9193-4980-a74b-567a0acc1b92-c000.snappy.parquet
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		@@ -1 +1 @@
		"2020-01-16 19:05:12.953264+00","{}","{}","{""schema_version"": ""-7780338601903350209""}","root"
		"2020-01-16 19:05:12.953264+00","{}","{}","{""schema_version"": ""1879278627024622741""}","root"