Merge pull request #113 from uc-cdis/chore/use-absolute-path-in-imports

Use absolute path in imports

datasimulator/generator.py

@@ -4,7 +4,7 @@
 
 from cdislogging import get_logger
 
-from .errors import UserError
+from datasimulator.errors import UserError
 
 
 logger = get_logger("data-simulator generator", log_level="info")

datasimulator/graph.py

@@ -1,10 +1,13 @@
 import json
 from os.path import join
 
-from .node import Node, logger
-from .errors import UserError, DictionaryError
-from .generator import generate_list_numbers
-from .utils import generate_list_numbers_from_file, get_graph_traversal_path
+from datasimulator.node import Node, logger
+from datasimulator.errors import UserError, DictionaryError
+from datasimulator.generator import generate_list_numbers
+from datasimulator.utils import (
+    generate_list_numbers_from_file,
+    get_graph_traversal_path,
+)
 
 EXCLUDED_NODE = ["program", "root", "data_release"]
 

datasimulator/main.py

@@ -1,12 +1,13 @@
 import os
 import argparse
 
+from cdislogging import get_logger
 from dictionaryutils import DataDictionary, dictionary
 
-from .graph import Graph
-from .submit_data_utils import submit_test_data
-from .file_handling import write_submission_order_to_file
-from cdislogging import get_logger
+from datasimulator.graph import Graph
+from datasimulator.submit_data_utils import submit_test_data
+from datasimulator.file_handling import write_submission_order_to_file
+
 logger = get_logger("data-simulator", log_level="info")
 
 
@@ -146,12 +147,13 @@ def run_submission_order_generation(graph, data_path, node_name=None):
     file_path = os.path.join(data_path, "DataImportOrderPath.txt")
     path_exists = os.path.exists(data_path)
     if not path_exists:
-        raise Exception(f"Cannot create file because path does not exist. Here is the path we expect: '{data_path}'")
+        raise Exception(
+            f"Cannot create file because path does not exist. Here is the path we expect: '{data_path}'"
+        )
     else:
         write_submission_order_to_file(submission_order, file_path)
 
 
-
 # python main.py simulate --url https://s3.amazonaws.com/dictionary-artifacts/bhcdictionary/0.4.3/schema.json --path ./data-simulator/sample_test_data --program DEV --project test
 def main():
     args = parse_arguments()

datasimulator/node.py

@@ -3,16 +3,16 @@
 
 from cdislogging import get_logger
 
-from .errors import UserError, DictionaryError
-from .generator import (
+from datasimulator.errors import UserError, DictionaryError
+from datasimulator.generator import (
     generate_hash,
     generate_datetime,
     generate_string_data,
     generate_array_data_type,
     generate_consent_code,
     generate_simple_primitive_data,
 )
-from .utils import is_mixed_type, random_choice, get_keys_list
+from datasimulator.utils import is_mixed_type, random_choice, get_keys_list
 
 
 # Ingnore system properties

datasimulator/utils.py

@@ -2,7 +2,7 @@
 import json
 from functools import reduce
 
-from .errors import UserError
+from datasimulator.errors import UserError
 
 
 def is_mixed_type(arr):