chore(qa): Prepare manifest for TheAnvil staging environments (staging) #1116
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
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|
@@ -7,27 +7,25 @@ | |
| "autodeploy": "yes" | ||
| }, | ||
| "versions": { | ||
| "arborist": "quay.io/cdis/arborist:2020.02", | ||
| "aws-es-proxy": "abutaha/aws-es-proxy:0.8", | ||
| "fence": "quay.io/cdis/fence:2020.02", | ||
| "fluentd": "fluent/fluentd-kubernetes-daemonset:v1.2-debian-cloudwatch", | ||
| "guppy": "quay.io/cdis/guppy:2020.02", | ||
| "hatchery": "quay.io/cdis/hatchery:2020.02", | ||
| "ambassador": "quay.io/datawire/ambassador:0.60.3", | ||
| "indexd": "quay.io/cdis/indexd:2020.02", | ||
| "manifestservice": "quay.io/cdis/manifestservice:2020.02", | ||
| "peregrine": "quay.io/cdis/peregrine:2020.02", | ||
| "pidgin": "quay.io/cdis/pidgin:2020.02", | ||
| "portal": "quay.io/cdis/data-portal:2020.02", | ||
| "revproxy": "quay.io/cdis/nginx:1.15.5-ctds", | ||
| "sheepdog": "quay.io/cdis/sheepdog:2020.02", | ||
| "sower": "quay.io/cdis/sower:2020.02", | ||
| "spark": "quay.io/cdis/gen3-spark:2020.02", | ||
| "tube": "quay.io/cdis/tube:2020.02", | ||
| "ssjdispatcher": "quay.io/cdis/ssjdispatcher:2020.02", | ||
| "wts": "quay.io/cdis/workspace-token-service:2020.02" | ||
| }, | ||
| "global": { | ||
| "environment": "anvilstaging", | ||
|
|
@@ -45,12 +43,78 @@ | |
| "tier_access_limit": 50, | ||
| "public_datasets": true | ||
| }, | ||
| "sower": [ | ||
| { | ||
| "name": "pelican-export", | ||
| "action": "export", | ||
| "container": { | ||
| "name": "job-task", | ||
| "image": "quay.io/cdis/pelican-export:2020.02", | ||
| "pull_policy": "Always", | ||
| "env": [ | ||
| { | ||
| "name": "DICTIONARY_URL", | ||
| "valueFrom": { | ||
| "configMapKeyRef": { | ||
| "name": "manifest-global", | ||
| "key": "dictionary_url" | ||
| } | ||
| } | ||
| }, | ||
| { | ||
| "name": "GEN3_HOSTNAME", | ||
| "valueFrom": { | ||
| "configMapKeyRef": { | ||
| "name": "manifest-global", | ||
| "key": "hostname" | ||
| } | ||
| } | ||
| }, | ||
| { | ||
| "name": "ROOT_NODE", | ||
| "value": "subject" | ||
| } | ||
| ], | ||
| "volumeMounts": [ | ||
| { | ||
| "name": "pelican-creds-volume", | ||
| "readOnly": true, | ||
| "mountPath": "/pelican-creds.json", | ||
| "subPath": "config.json" | ||
| }, | ||
| { | ||
| "name": "peregrine-creds-volume", | ||
| "readOnly": true, | ||
| "mountPath": "/peregrine-creds.json", | ||
| "subPath": "creds.json" | ||
| } | ||
| ], | ||
| "cpu-limit": "1", | ||
| "memory-limit": "12Gi" | ||
| }, | ||
| "volumes": [ | ||
| { | ||
| "name": "pelican-creds-volume", | ||
| "secret": { | ||
| "secretName": "pelicanservice-g3auto" | ||
| } | ||
| }, | ||
| { | ||
| "name": "peregrine-creds-volume", | ||
| "secret": { | ||
| "secretName": "peregrine-creds" | ||
| } | ||
| } | ||
| ], | ||
| "restart_policy": "Never" | ||
| } | ||
| ], | ||
| "google": { | ||
| "enabled": "yes" | ||
| }, | ||
| "ssjdispatcher": { | ||
| "job_images": { | ||
| "indexing": "quay.io/cdis/indexs3client:2020.02" | ||
| } | ||
| }, | ||
| "arborist": { | ||
|
|
@@ -67,8 +131,7 @@ | |
| "type": "file" | ||
| } | ||
| ], | ||
| "auth_filter_field": "auth_resource_path" | ||
| }, | ||
| "hatchery": { | ||
| "user-namespace": "jupyter-pods", | ||
|
|
@@ -77,7 +140,7 @@ | |
| "sidecar": { | ||
| "cpu-limit": "1.0", | ||
| "memory-limit": "512Mi", | ||
| "image": "quay.io/cdis/gen3fuse-sidecar:2020.02", | ||
| "env": { | ||
| "NAMESPACE": "default", | ||
| "HOSTNAME": "staging.theanvil.io" | ||
|
|
@@ -110,6 +173,138 @@ | |
| "path-rewrite": "/", | ||
| "use-tls": "false", | ||
| "ready-probe": "/" | ||
| }, | ||
| { | ||
| "target-port": 8888, | ||
| "cpu-limit": "1.0", | ||
| "memory-limit": "512Mi", | ||
| "name": "Jupyter Notebook Bio Python", | ||
| "image": "quay.io/occ_data/jupyternotebook:1.9.0", | ||
|
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| "env": {}, | ||
| "args": [ | ||
| "--NotebookApp.base_url=/lw-workspace/proxy/", | ||
| "--NotebookApp.password=''", | ||
| "--NotebookApp.token=''" | ||
| ], | ||
| "command": [ | ||
| "start-notebook.sh" | ||
| ], | ||
| "path-rewrite": "/lw-workspace/proxy/", | ||
| "use-tls": "false", | ||
| "ready-probe": "/lw-workspace/proxy/", | ||
| "lifecycle-post-start": [ | ||
| "/bin/sh", | ||
| "-c", | ||
| "export IAM=`whoami`; rm -rf /home/$IAM/pd/dockerHome; ln -s $(pwd) /home/$IAM/pd/dockerHome; mkdir -p /home/$IAM/.jupyter/custom; echo \"define(['base/js/namespace'], function(Jupyter){Jupyter._target = '_self';})\" >/home/$IAM/.jupyter/custom/custom.js; ln -s /data /home/$IAM/pd/; true" | ||
| ], | ||
| "user-uid": 1000, | ||
| "fs-gid": 100, | ||
| "user-volume-location": "/home/jovyan/pd" | ||
| }, | ||
| { | ||
| "target-port": 8888, | ||
| "cpu-limit": "4.0", | ||
| "memory-limit": "15512Mi", | ||
| "name": "Jupyter Notebook Power Python", | ||
| "image": "quay.io/occ_data/jupyternotebook:1.7.2", | ||
|
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| "env": {}, | ||
| "args": [ | ||
| "--NotebookApp.base_url=/lw-workspace/proxy/", | ||
| "--NotebookApp.password=''", | ||
| "--NotebookApp.token=''" | ||
| ], | ||
| "command": [ | ||
| "start-notebook.sh" | ||
| ], | ||
| "path-rewrite": "/lw-workspace/proxy/", | ||
| "use-tls": "false", | ||
| "ready-probe": "/lw-workspace/proxy/", | ||
| "lifecycle-post-start": [ | ||
| "/bin/sh", | ||
| "-c", | ||
| "export IAM=`whoami`; rm -rf /home/$IAM/pd/dockerHome; ln -s $(pwd) /home/$IAM/pd/dockerHome; mkdir -p /home/$IAM/.jupyter/custom; echo \"define(['base/js/namespace'], function(Jupyter){Jupyter._target = '_self';})\" >/home/$IAM/.jupyter/custom/custom.js; ln -s /data /home/$IAM/pd/; true" | ||
| ], | ||
| "user-uid": 1000, | ||
| "fs-gid": 100, | ||
| "user-volume-location": "/home/jovyan/pd" | ||
| }, | ||
| { | ||
| "target-port": 8888, | ||
| "cpu-limit": "1.0", | ||
| "memory-limit": "8096Mi", | ||
| "name": "Helium Autoencoder Demo", | ||
| "image": "quay.io/cdis/auntoencoder-copd-demo:latest", | ||
|
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| "env": {}, | ||
| "args": [ | ||
| "--NotebookApp.base_url=/lw-workspace/proxy/", | ||
| "--NotebookApp.password=''", | ||
| "--NotebookApp.token=''" | ||
| ], | ||
| "command": [ | ||
| "start-notebook.sh" | ||
| ], | ||
| "path-rewrite": "/lw-workspace/proxy/", | ||
| "use-tls": "false", | ||
| "ready-probe": "/lw-workspace/proxy/", | ||
| "lifecycle-post-start": [ | ||
| "/bin/sh", | ||
| "-c", | ||
| "export IAM=`whoami`; rm -rf /home/$IAM/pd/dockerHome; ln -s $(pwd) /home/$IAM/pd/dockerHome; mkdir -p /home/$IAM/.jupyter/custom; echo \"define(['base/js/namespace'], function(Jupyter){Jupyter._target = '_self';})\" >/home/$IAM/.jupyter/custom/custom.js; ln -s /data /home/$IAM/pd/; true" | ||
| ], | ||
| "user-uid": 1000, | ||
| "fs-gid": 100 | ||
| }, | ||
| { | ||
| "target-port": 8888, | ||
| "cpu-limit": "1.0", | ||
| "memory-limit": "8096Mi", | ||
| "name": "Helium Tensorflow-Pytorch", | ||
| "image": "heliumdatastage/tensorflow-pytorch-ext:1", | ||
| "env": {}, | ||
| "args": [ | ||
| "--NotebookApp.base_url=/lw-workspace/proxy/", | ||
| "--NotebookApp.password=''", | ||
| "--NotebookApp.token=''" | ||
| ], | ||
| "command": [ | ||
| "start-notebook.sh" | ||
| ], | ||
| "path-rewrite": "/lw-workspace/proxy/", | ||
| "use-tls": "false", | ||
| "ready-probe": "/lw-workspace/proxy/", | ||
| "lifecycle-post-start": [ | ||
| "/bin/sh", | ||
| "-c", | ||
| "export IAM=`whoami`; rm -rf /home/$IAM/pd/dockerHome; ln -s $(pwd) /home/$IAM/pd/dockerHome; mkdir -p /home/$IAM/.jupyter/custom; echo \"define(['base/js/namespace'], function(Jupyter){Jupyter._target = '_self';})\" >/home/$IAM/.jupyter/custom/custom.js; ln -s /data /home/$IAM/pd/; true" | ||
| ], | ||
| "user-uid": 1000, | ||
| "fs-gid": 100 | ||
| }, | ||
| { | ||
| "target-port": 8888, | ||
| "cpu-limit": "1.0", | ||
| "memory-limit": "8096Mi", | ||
| "name": "Helium CIP Demo", | ||
| "image": "heliumdatastage/jup-cip:v1", | ||
| "env": {}, | ||
| "args": [ | ||
| "--NotebookApp.base_url=/lw-workspace/proxy/", | ||
| "--NotebookApp.password=''", | ||
| "--NotebookApp.token=''" | ||
| ], | ||
| "command": [ | ||
| "start-notebook.sh" | ||
| ], | ||
| "path-rewrite": "/lw-workspace/proxy/", | ||
| "use-tls": "false", | ||
| "ready-probe": "/lw-workspace/proxy/", | ||
| "lifecycle-post-start": [ | ||
| "/bin/sh", | ||
| "-c", | ||
| "export IAM=`whoami`; rm -rf /home/$IAM/pd/dockerHome; ln -s $(pwd) /home/$IAM/pd/dockerHome; mkdir -p /home/$IAM/.jupyter/custom; echo \"define(['base/js/namespace'], function(Jupyter){Jupyter._target = '_self';})\" >/home/$IAM/.jupyter/custom/custom.js; ln -s /data /home/$IAM/pd/; true" | ||
| ], | ||
| "user-uid": 1000, | ||
| "fs-gid": 100 | ||
| } | ||
| ] | ||
| }, | ||
|
|
@@ -121,6 +316,18 @@ | |
| "cpu": 0.5, | ||
| "memory": "256M", | ||
| "image": "quay.io/occ_data/jupyternotebook:1.9.0" | ||
| }, | ||
| { | ||
| "name": "Bioinfo - Python/R", | ||
| "cpu": 1, | ||
| "memory": "1024M", | ||
| "image": "quay.io/occ_data/jupyternotebook:1.9.0" | ||
| }, | ||
| { | ||
| "name": "Helium COPD Demo", | ||
| "cpu": 1, | ||
| "memory": "1024M", | ||
| "image": "ananyak8srenci/autoencoder-copd-demo:1d33030cef16" | ||
| } | ||
| ] | ||
| }, | ||
|
|
@@ -211,8 +418,14 @@ | |
| }, | ||
| "fence": { | ||
| "strategy": "auto", | ||
| "min": 5, | ||
| "max": 15, | ||
| "targetCpu": 40 | ||
| }, | ||
| "presigned-url-fence": { | ||
| "strategy": "auto", | ||
| "min": 2, | ||
| "max": 5, | ||
| "targetCpu": 40 | ||
| }, | ||
| "indexd": { | ||
|
|
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Why not
2020.03?There was a problem hiding this comment.
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That's coming up next.