Merge pull request #4696 from uc-cdis/feat/healprod_strides

Add STRIDES to heal production
uc-cdis · Jun 8, 2022 · bfbe9a1 · bfbe9a1
2 parents 99067ab + f7b9313
commit bfbe9a1
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Showing 4 changed files with 100 additions and 9 deletions.
diff --git a/.secrets.baseline b/.secrets.baseline
@@ -1,6 +1,6 @@
 {
   "exclude": {
-    "files": null,
+    "files": "^.secrets.baseline$",
     "lines": null
   },
   "generated_at": "2022-06-07T14:28:31Z",
@@ -61,6 +61,7 @@
     ".travis.yml": [
       {
         "hashed_secret": "a1a9cfa36872cfd9ae25a539f348aee03bafcdd5",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 58,
         "type": "Base64 High Entropy String"
@@ -69,6 +70,7 @@
     "accessclinicaldata.niaid.nih.gov/manifests/fence/fence-config-public.yaml": [
       {
         "hashed_secret": "5d07e1b80e448a213b392049888111e1779a52db",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 172,
         "type": "Secret Keyword"
@@ -77,6 +79,7 @@
     "accessclinicaldata.niaid.nih.gov/manifests/hatchery/hatchery.json": [
       {
         "hashed_secret": "0da0e0005ca04acb407af2681d0bede6d9406039",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 56,
         "type": "Secret Keyword"
@@ -85,12 +88,14 @@
     "acct.bionimbus.org/dashboard/Secure/reports/modules/jasmine-core/package.json": [
       {
         "hashed_secret": "65ecd0650541b6caecdb6986f1871c2e6a95bdfe",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 5,
         "type": "Base64 High Entropy String"
       },
       {
         "hashed_secret": "dc5f08c86a9fa844087e0ad314cc99a85cd0b4c3",
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         "type": "Hex High Entropy String"
@@ -99,6 +104,7 @@
     "acct.bionimbus.org/dashboard/Secure/reports/modules/lit-html/package.json": [
       {
         "hashed_secret": "e35a49e53bb97044b35cc0e4d963b4ac49e9ac7e",
+        "is_secret": false,
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         "type": "Base64 High Entropy String"
@@ -107,20 +113,61 @@
     "acct.bionimbus.org/manifests/hatchery/jupyterslim.yaml": [
       {
         "hashed_secret": "9b5925ea817163740dfb287a9894e8ab3aba2c18",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 12,
         "type": "Secret Keyword"
       }
     ],
+    "brh.data-commons.org/dashboard/Public/notebooks/AnVIL_1k_Genome_data_analysis.html": [
+      {
+        "hashed_secret": "51de2b835bd35a67eb32dbcd3d77d4b96e5aa39d",
+        "is_verified": false,
+        "line_number": 8484,
+        "type": "Secret Keyword"
+      }
+    ],
+    "brh.data-commons.org/dashboard/Public/notebooks/GDC_TCGA-CHOL_RNA_analysis_BRH_040722.html": [
+      {
+        "hashed_secret": "104c7979a08cfe23ba5371559519058998ff5523",
+        "is_verified": false,
+        "line_number": 20508,
+        "type": "Artifactory Credentials"
+      },
+      {
+        "hashed_secret": "10b851ee159c9ea2d10aa6e49afd47cbda3a2811",
+        "is_verified": false,
+        "line_number": 23219,
+        "type": "Artifactory Credentials"
+      }
+    ],
+    "brh.data-commons.org/dashboard/Public/notebooks/JCOIN_MOUD_accessibility_jupyter_notebook_BRH.html": [
+      {
+        "hashed_secret": "51de2b835bd35a67eb32dbcd3d77d4b96e5aa39d",
+        "is_verified": false,
+        "line_number": 8559,
+        "type": "Secret Keyword"
+      }
+    ],
+    "brh.data-commons.org/dashboard/Public/notebooks/OADC_CCLE_gene_expression_data_analysis.html": [
+      {
+        "hashed_secret": "51de2b835bd35a67eb32dbcd3d77d4b96e5aa39d",
+        "is_verified": false,
+        "line_number": 8484,
+        "type": "Secret Keyword"
+      }
+    ],
     "brh.data-commons.org/manifests/hatchery/hatchery.json": [
       {
         "hashed_secret": "bfffe270c3a4a190876ea0a4d1cd65fa255a48b9",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 10,
         "type": "Base64 High Entropy String"
       },
       {
         "hashed_secret": "0da0e0005ca04acb407af2681d0bede6d9406039",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 145,
         "type": "Secret Keyword"
@@ -129,6 +176,7 @@
     "caninedc.org/manifests/hatchery/jupyterslim.yaml": [
       {
         "hashed_secret": "9b5925ea817163740dfb287a9894e8ab3aba2c18",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 12,
         "type": "Secret Keyword"
@@ -137,6 +185,7 @@
     "chicagoland.pandemicresponsecommons.org/dashboard/Public/index.html": [
       {
         "hashed_secret": "a22d88b65fc2d9afbc2205d06f68d7af807b045c",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 7,
         "type": "Base64 High Entropy String"
@@ -145,6 +194,7 @@
     "chicagoland.pandemicresponsecommons.org/dashboard/Public/notebooks/3D_Protein_Vis.html": [
       {
         "hashed_secret": "51de2b835bd35a67eb32dbcd3d77d4b96e5aa39d",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 8484,
         "type": "Secret Keyword"
@@ -153,60 +203,70 @@
     "chicagoland.pandemicresponsecommons.org/dashboard/Public/notebooks/3D_Protein_Vis_7D4F_view.html": [
       {
         "hashed_secret": "a5b0e1471957df2229fa14577e981cf10a0e8f28",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 12,
         "type": "Base64 High Entropy String"
       },
       {
         "hashed_secret": "68b62319fe8c931b8b765931e00228a7a680d1f4",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 20,
         "type": "Hex High Entropy String"
       },
       {
         "hashed_secret": "6eedc35cc2f900101ba322d8f921656942031b3a",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 26,
         "type": "Hex High Entropy String"
       },
       {
         "hashed_secret": "2ab709093d5223b73dffb265add2508d657362f8",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 38,
         "type": "Hex High Entropy String"
       },
       {
         "hashed_secret": "228cb71ad35ce46dc73c8d3d159be415ff37af06",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 44,
         "type": "Hex High Entropy String"
       },
       {
         "hashed_secret": "74b3ff5b265ca3cb21a95db9ce974792874ea000",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 367,
         "type": "Hex High Entropy String"
       },
       {
         "hashed_secret": "f5b428f1cdf3b63d50025ed207d34133ad08aa8e",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 373,
         "type": "Hex High Entropy String"
       },
       {
         "hashed_secret": "8408db9ad230e60d7185a9b5afcf5beee9f47361",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 383,
         "type": "Hex High Entropy String"
       },
       {
         "hashed_secret": "3e08f2a20551093adf17cb56be20cdcde04fa065",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 389,
         "type": "Hex High Entropy String"
       },
       {
         "hashed_secret": "223dbeb92a6ca2dc0244852b7f7bcd070d527875",
+        "is_secret": false,
         "is_verified": false,
         "line_number": 395,
         "type": "Hex High Entropy String"
@@ -5851,10 +5911,16 @@
       }
     ],
     "healdata.org/manifests/hatchery/hatchery.json": [
+      {
+        "hashed_secret": "bfc2fa27299a2004b55d0fb8d1e15f6e67c00fd5",
+        "is_verified": false,
+        "line_number": 5,
+        "type": "Base64 High Entropy String"
+      },
       {
         "hashed_secret": "0da0e0005ca04acb407af2681d0bede6d9406039",
         "is_verified": false,
-        "line_number": 146,
+        "line_number": 148,
         "type": "Secret Keyword"
       }
     ],
@@ -6571,10 +6637,16 @@
       }
     ],
     "preprod.healdata.org/manifests/hatchery/hatchery.json": [
+      {
+        "hashed_secret": "bfc2fa27299a2004b55d0fb8d1e15f6e67c00fd5",
+        "is_verified": false,
+        "line_number": 5,
+        "type": "Base64 High Entropy String"
+      },
       {
         "hashed_secret": "0da0e0005ca04acb407af2681d0bede6d9406039",
         "is_verified": false,
-        "line_number": 144,
+        "line_number": 146,
         "type": "Secret Keyword"
       }
     ],
@@ -7354,6 +7426,22 @@
         "type": "Secret Keyword"
       }
     ],
+    "releases/2022/05/manifest.json": [
+      {
+        "hashed_secret": "0da0e0005ca04acb407af2681d0bede6d9406039",
+        "is_verified": false,
+        "line_number": 200,
+        "type": "Secret Keyword"
+      }
+    ],
+    "releases/2022/06/manifest.json": [
+      {
+        "hashed_secret": "0da0e0005ca04acb407af2681d0bede6d9406039",
+        "is_verified": false,
+        "line_number": 200,
+        "type": "Secret Keyword"
+      }
+    ],
     "spoke1.workspace.occ-pla.net/manifests/hatchery/jupyterslim.yaml": [
       {
         "hashed_secret": "9b5925ea817163740dfb287a9894e8ab3aba2c18",

diff --git a/healdata.org/manifest.json b/healdata.org/manifest.json
@@ -14,13 +14,13 @@
     "dashboard": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/gen3-statics:2022.05",
     "fence": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/fence:2022.05",
     "fluentd": "fluent/fluentd-kubernetes-daemonset:v1.2-debian-cloudwatch",
-    "hatchery": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/hatchery:2022.05",
+    "hatchery": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/hatchery:1.0.0",
     "indexd": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/indexd:2022.05",
     "manifestservice": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/manifestservice:2022.05",
     "metadata": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/metadata-service:2022.05",
     "peregrine": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/peregrine:2022.05",
     "pidgin": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/pidgin:2022.05",
-    "portal": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/data-portal:2022.05",
+    "portal": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/data-portal:3.24.0",
     "revproxy": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/nginx:2022.05",
     "sheepdog": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/sheepdog:2022.05",
     "ssjdispatcher": "707767160287.dkr.ecr.us-east-1.amazonaws.com/gen3/ssjdispatcher:2022.05",

diff --git a/healdata.org/manifests/hatchery/hatchery.json b/healdata.org/manifests/hatchery/hatchery.json
@@ -2,10 +2,12 @@
   "user-namespace": "jupyter-pods",
   "sub-dir": "/lw-workspace",
   "user-volume-size": "10Gi",
+  "pay-models-dynamodb-table": "bmh-admin-portal-backend-bmhworkspacetableD4D73E43-1SZM8FA8IP6F",
   "default-pay-model": {
-    "aws_account_id": "252835817747",
-    "name": "healworkspaces",
-    "region": "us-east-1"
+    "bmh_workspace_id": "blanket_billing_eks",
+    "region": "us-east-1",
+    "account_id": "252835817747",
+    "workspace_type": "healworkspaces"
   },
   "sidecar": {
     "cpu-limit": "1.0",

diff --git a/healdata.org/portal/gitops.json b/healdata.org/portal/gitops.json
@@ -551,5 +551,6 @@
   "showArboristAuthzOnProfile": true,
   "showFenceAuthzOnProfile": false,
   "showExternalLoginsOnProfile": true,
-  "componentToResourceMapping": {}
+  "componentToResourceMapping": {},
+  "stridesPortalURL": "https://healportal.org"
 }