Merge pull request #7809 from uc-cdis/chore/niaid_add_public_files_sc…

…ript

-Add data dictionary and data use limitations public files for SCRIPT…

accessclinicaldata.niaid.nih.gov/dashboard/Public/files/SCRIPT_Data_Dictionary.csv

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+Patient_id,Anonymized patient study ID
+Sample,Anonymized bronchoalveolar lavage (BAL) sample ID
+,
+Demographics and outcomes,
+Age,"Patient age, except those >=89 years old are aggregated into a group per Safe Harbor deidentification guidelines; this group is  labeled 91"
+BMI,Patient body mass index [Kg/m2]
+Outcome,"Disposition of where they were discharged to, as recorded in electronic health record"
+Superinfection,"Superinfection was defined as bacterial infection co-occurring with a viral pathogen diagnosed by BAL sampling. For the purposes of this report, ventilator-associated pneumonia (VAP) refers to incident bacterial pneumonia occurring after at least 48 hours of mechanical ventilation in patients who were enrolled as a non-pneumonia control or who were enrolled with viral pneumonia (due to SARS-CoV-2 or another virus) but who did not have evidence of an underlying viral infection at the time of the current BAL sample (i.e., had cleared their viral infection)."
+SOFA,Mean Sequential Organ Failure Assessment score over patient stay
+,
+Clinical parameters at time of BAL,
+WBC,White blood cell count [K/UL]
+Neutrophils (blood),Absolute neutrophil count [K/UL]
+Lymphocytes (blood),Absolute lymphocyte count [K/UL]
+Eosinophils (blood),Absolute eosinophil count [K/UL]
+CRP,C-reactive protein [mg/L]
+LDH,Lactate dehydrogenase [units/L]
+CK,Creatine kinase
+Procalcitonin,Mean procalcitonin [ng/mL]
+Ferritin,Mean ferritin [ng/mL]
+Troponin,Troponin [ng/mL]
+Creatinine,Creatinine [mg/dL]
+AST,Aspartate aminotransferase [U/L]
+D-dimer,D-Dimer [ng/mL D-DU]
+FiO2,Fraction inspired oxygen [%]
+PEEP,Positive end-expiratory pressure [cm H2O]
+P/F,Arterial partial pressure of oxygen / fractional inspired oxygen
+Respiratory system compliance,Lung compliance [mL/cm H2O]
+Driving pressure,Driving pressure [cmH2O]
+Vte,Minute ventilation [L/minute]
+Arterial PH,Arterial blood gas pH
+PaO2,Arterial blood gas measuring partial pressure of oxygen [mm Hg]
+PaCO2,Arterial blood gas measuring partial pressure of carbon dioxide [mm Hg]
+HCO3,Arterial blood gas measuring bicarbonate [mEq/L]
+Days on MV,Number of days on mechanical ventilation