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"decapitate" function to delete edges older than a particular time. #2236

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jeromekelleher opened this issue May 4, 2022 · 1 comment
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"decapitate" function to delete edges older than a particular time. #2236

jeromekelleher opened this issue May 4, 2022 · 1 comment
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@jeromekelleher
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Python API Issue is about the Python API
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Python 0.5.0

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@jeromekelleher
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As discussed in #281, we want a way to delete all the topology in a tree sequence that's older than a particular time. Various names have been suggested for this operation, but since we've already settled on "recapitation" for the inverse of this operation (putting older topology on top of an existing tree sequence) then it seems simplest to just call it decapitate.
@jeromekelleher jeromekelleher added the Python API Issue is about the Python API label May 4, 2022
@jeromekelleher jeromekelleher self-assigned this May 4, 2022
@benjeffery
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Shame that decapitate has such unsavory connotations, but I'm not sure I can think of a more tasteful name that fits as well.

jeromekelleher added a commit to jeromekelleher/tskit that referenced this issue May 4, 2022
@jeromekelleher
Implement decapitate function
1c27449 
Closes tskit-dev#2236
jeromekelleher added a commit to jeromekelleher/tskit that referenced this issue May 13, 2022
@jeromekelleher
Implement decapitate function
ab6f86d 
Closes tskit-dev#2236
jeromekelleher added a commit to jeromekelleher/tskit that referenced this issue May 13, 2022
@jeromekelleher
Implement decapitate function
d90706c 
Closes tskit-dev#2236
@jeromekelleher jeromekelleher added this to the Python 0.5.0 milestone May 18, 2022
jeromekelleher added a commit to jeromekelleher/tskit that referenced this issue May 18, 2022
@jeromekelleher
Implement decapitate function
ab17582 
Closes tskit-dev#2236
jeromekelleher added a commit to jeromekelleher/tskit that referenced this issue May 20, 2022
@jeromekelleher
Implement decapitate function
8b14ad2 
Closes tskit-dev#2236
jeromekelleher added a commit to jeromekelleher/tskit that referenced this issue May 21, 2022
@jeromekelleher
Implement decapitate function
0596953 
Closes tskit-dev#2236
jeromekelleher added a commit to jeromekelleher/tskit that referenced this issue May 23, 2022
@jeromekelleher
Implement decapitate function
6a2c704 
Closes tskit-dev#2236
@jeromekelleher jeromekelleher mentioned this issue May 26, 2022
Merged
jeromekelleher added a commit to jeromekelleher/tskit that referenced this issue Jun 9, 2022
@jeromekelleher
Decapitate!
2ff1984 
Closes tskit-dev#2236
jeromekelleher added a commit to jeromekelleher/tskit that referenced this issue Jun 10, 2022
@jeromekelleher
Decapitate!
55c4def 
Closes tskit-dev#2236
@mergify mergify bot closed this as completed in 94a0354 Jun 10, 2022
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