Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell
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Feb 7, 2023 - Jupyter Notebook
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wsi-images
Here are 28 public repositories matching this topic...
AI-based pathology predicts origins for cancers of unknown primary - Nature
deep-learning cup deep cancer-imaging-research cancer-research histology bioimage-informatics pathology cancer-detection bioimage-analysis toad histopathology wsi-images mahmoodlab unknown-primary
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Nov 1, 2021 - Python
Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021
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May 14, 2024 - Python
Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering
fish deep-learning image-retrieval histology bioimage-informatics pathology bioimage-analysis image-search-engine histopathology vqvae wsi-images mahmoodlab
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Jun 9, 2023 - Python
Predicting Axillary Lymph Node Metastasis in Early Breast Cancer Using Deep Learning on Primary Tumor Biopsy Slides, BCNB Dataset
deep-learning breast-cancer-prediction biopsy breast-cancer metastasis breast-cancer-classification wsi-images primary-tumor-classification axillary-lymph-node-metastasis
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May 8, 2023 - Python
DeeperHistReg - Source Code
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Apr 26, 2024 - Jupyter Notebook
MICCAI2020. "Multiple Instance Learning with Center Embeddings for Histopathology Image Classification"
representation-learning weakly-supervised-learning multiple-instance-learning histopathology-images wsi-images
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Jan 22, 2021 - Python
The code for Kernel attention transformer (KAT)
wsi histopathology pathology-image histopathology-images whole-slide-image wsi-images histopathology-wsi wsi-encode wsi-classificaiton wsi-representation histopathology-image-classfication kernel-transformer histopathology-feature
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Jun 13, 2024 - Python
[ESWA 2023] Implementation of DSCA: A Dual-stream Network with Cross-attention on Whole-Slide Image Pyramids for Cancer Prognosis
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Apr 24, 2024 - Python
This is a viewer app that provides using to zoom and pan tools Deep Zoom Image (dzi) or Whole Slide Image (wsi) using Electron JS and OpenSeaDragon .
electron nodejs node electron-app node-js electronjs openseadragon deep-zoom-images whole-slide-imaging dzi wsi openseadragon-viewer whole-slide-image wsi-images
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Apr 13, 2022 - JavaScript
Breast Cancer Image Classification On WSI With Spatial Correlations https://teacher.bupt.edu.cn/zhuchuang/en/index.htm
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Jun 11, 2021 - Python
Integrative Spatial Analysis of H&E and IHC Images Identifies Prognostic Immune Subtypes correlated with Progression Free Survival in HPV-Related Oropharyngeal Squamous Cell Carcinoma
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Jul 8, 2024 - Jupyter Notebook
Python 3 Package for optimally sampling big images with texture-aware patchification based on SLIC superpixels. So Sleek !
package computer-vision tiling image-processing sampling data-preprocessing data-preparation digital-pathology wsi-images big-image pythonpackage image-sampling
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Jan 15, 2024 - Python
Diagnosis of histologic growth patterns of lung cancer in digital slides using deep learning.
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Aug 16, 2020 - Python
A plugin for TensorBoard to show WSI images. The plugin is based on Deep Zoom Image (DZI).
visualization plugin viewer tensorboard openslide dzi deepzoom wsi tensoflow histopathology wsi-images wsi-viewer
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Feb 6, 2021 - JavaScript
Given an image of cells from a WSI, identify the mitotic figures and return a mitotic index.
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Apr 18, 2023 - Python
Automated batch processing for tissue microscopy image data
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Nov 22, 2024 - Cool
PathoPatcher is a Python project designed for accelerating Whole Slide Image Preprocessing, employing AI-based preprocessing techniques with features like annotation handling, color normalization, and configurable parameters
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Jan 9, 2025 - Python
Algorithm for the Whole Slide Images registration.
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Mar 13, 2024 - Python
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