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viral-metagenomics

Here are 2 public repositories matching this topic...

vipr

nf-core / vipr

Assembly and intrahost / low-frequency variant calling for viral samples

workflow virus pipeline nextflow metagenomics viruses variant-calling genome-assembly viral-ngs viral viral-genomics viral-metagenomics nf-core

Updated Feb 12, 2020
Nextflow

Joon-Klaps / viralgenie

Detect iSNV and construct whole viral genomes from metagenomic samples

nextflow ngs epidemiology fastq virology viral-metagenomics virus-genomes

Updated Jan 21, 2025
Nextflow

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