scripts to process, join, split, or add new proteins to a supermatrix alignment using hmms
a tool for automatic construction of molecular data matrix for phylogenetic inference based on GenBank records
in depth analysis of heteropecillious sites in supermatrices
🐹 Building a tree of some small fluffy animals
This repository provides an easy-to-use Python-based pipeline for reconstructing phylogenetic trees from whole bacterial genomes. It automates the process of identifying orthologous single-copy genes, aligning sequences, trimming alignments, and generating a concatenated supermatrix ready for phylogenetic analysis. The pipeline requires only .fasta
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