micahvista / MAMnet Star 7 Code Issues Pull requests MAMnet uses a deep learning network to call genetic variants from third generation DNA sequencing data. bioinformatics deep-neural-networks deep-learning genomics structural-variations structural-variation-calling Updated Oct 26, 2023 Python
CarolinaPB / population-structural-var-calling-smoove Star 3 Code Issues Pull requests population structural variant calling with smoove bioinformatics snakemake pipeline plink vep structural-variation survivor smoove snakemake-pipeline structural-variation-calling Updated Feb 2, 2024 Python
jasonwong-lab / smk_sv Star 2 Code Issues Pull requests A snakemake pipeline to call structure variants from ONT data bioinformatics bioinformatics-pipeline structural-variations structural-variants long-read-sequencing structural-variation-calling oxford-nanopore-sequencing Updated Dec 15, 2024 Python
jiadong324 / ComparStra-Parser Star 1 Code Issues Pull requests Scripts used to compare SVs detected from long read and long read assembly long-read-sequencing sequence-assembly structural-variation-calling Updated Apr 25, 2023 Python