StringDB is a modular, key/value pair archival DB designed to consume *tiny* amounts of ram & produce *tiny* databases.
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Feb 24, 2023 - C#
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stringdb
Here are 11 public repositories matching this topic...
Research compendium for Viscardi et al, 2020.
bioinformatics r evolution network-analysis kegg igraph orthology expression-atlas research-compendium stringdb neurotransmission
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Aug 25, 2020 - TeX
Additional utilities for [STRINGdb](https://www.bioconductor.org/packages/release/bioc/html/STRINGdb.html).
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Aug 27, 2021 - R
Gexplora - user-interface to analyse genomic elements along chromosomes
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Nov 15, 2020 - Python
Functional impact of cancer-specific isoform switching events: Visualization via STRING interaction network
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Apr 27, 2023 - HTML
In this project, we designed a pipeline to identify new biomarkers with microarray analysis. (AI & Intelligent Medicine, Spring 2022).
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Jun 7, 2022 - Python
Customize your specific organism cellchatdb
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Feb 20, 2024 - R
This repository includes scripts, data, and documentation for analyzing Bulk RNA-seq data from NCBI GEO, supporting journal paper preparation in alignment with course requirements.
cytoscape differential-expression ncbi-geo bulk-rna-seq grein stringdb deseq2-analysis metascape hub-genes immune-cell-ai
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Jan 7, 2025 - R
This code was written and used to perform the comparative interactome analysis of β-arrestin1 and 2.
api gene-ontology uniprot interactome enrichment-analysis uniprot-ids protein-protein-interaction stringdb id-mapping go-enrichment
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May 4, 2023 - Python
This repository showcases bioinformatics analysis and visualization results from an independent project for a scientific writing course, utilizing iDEP and a microarray dataset derived from NCBI GEO.
exploratory-data-analysis gene-ontology differential-expression kegg-pathway bioinformatics-analysis ncbi-geo limma wgcna bioinformatics-visualization stringdb microarray-data-analysis idep
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Jan 7, 2025
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