Group B Strep pipelines for large dataset gene analysis from Illumina sequencing.
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Apr 7, 2022 - Python
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streptococcus-agalactiae
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This repository contains scripts used to analyze data generated for the project described in the following manuscript (see ReadMe), including comparative analysis and visualization of nanoparticle tracking (quantification) and proteomics (composition) data of Group B Streptococcus membrane vesicles across various antibiotic treatment conditions.
proteomics antibiotics membrane-vesicles streptococcus-agalactiae bacterial-infections nanoparticle-analysis
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Jun 17, 2024 - R
This repository contains scripts used to collect and analyze data from whole genome sequences of clinical Streptococcus agalactiae (Group B Strep) isolates for the project described in the following manuscript: Pell, M.E. et al., bioRxiv, 2024-04-01.
variant-calling whole-genome-sequencing antibiotic-resistance virulence-genes streptococcus-agalactiae bacterial-genomics pangenome-analysis
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Updated
Jun 17, 2024 - R
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