spatialdata

Here are 5 public repositories matching this topic...

gustaveroussy / sopa

Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCycler / MACSima / etc)

snakemake pipeline memory-management generalization spatial-transcriptomics spatialdata multiplexed-imaging spatial-omics

Updated Feb 8, 2025
Python

osgeonepal / geotile

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GeoTile is the python library for tiling the geographic raster data (eg. Tiff etc)

python tiles tiff gis tiling raster remote-sensing satellite-imagery map-tiles spatialdata geotiler tiling-image geotile gistile tiff-tile

Updated Sep 9, 2024
Python

quentinblampey / spatialdata_xenium_explorer

Star

Interoperability between SpatialData and the Xenium Explorer

visualization spatial-analysis 10xgenomics spatialdata spatial-omics

Updated Jul 31, 2024
Python

metaspace2020 / metaspace-converter

Star

Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData

python metaspace anndata spatialdata scverse

Updated Mar 16, 2024
Python

srivarra / anatomize

Star

Xarray powered multidimensional-image analysis toolkit.

python xarray numba single-cell-analysis spatial-transcriptomics anndata spatialdata

Updated Oct 14, 2024
Python

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spatialdata

Here are 5 public repositories matching this topic...

gustaveroussy / sopa

osgeonepal / geotile

quentinblampey / spatialdata_xenium_explorer

metaspace2020 / metaspace-converter

srivarra / anatomize

Improve this page

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