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short-reads

Here are 4 public repositories matching this topic...

bcgsc / SSAKE

🍶 Genome assembly with short sequence reads

dna-sequences genome-scaffolding short-reads sequence-assembly genome-assembler read-pairs

Updated Jan 21, 2024
Perl

clemgoub / TypeTE

Genotyping of segregating mobile elements insertions

bioinformatics vcf alu transposons transposable-elements genotype-likelihoods genotyping short-reads

Updated Jul 29, 2021
Perl

Varathon

yjx1217 / Varathon

A scalable variant calling and benchmarking framework supporting both short and long reads.

genomics variant-calling read-mapping structural-variation long-reads short-reads

Updated Oct 30, 2024
Perl

bcgsc / TASR

Targeted Assembly of Short Reads

assembler short-reads targeted-assembly

Updated Dec 13, 2023
Perl

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