A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during de novo assembly.

KOMB is a tool for fast identification of unitigs of interest in metagenomes. KOMB introduces the concept of a Hybrid Unitig Graph (an extension to compacted de Bruijn graphs) and relies on k-core and K-truss decomposition algorithms.

Telomeric Repeat motif Identification tool with Short-read sequencing

Frontend for vntyper.org, a web tool to perform alignment-free genotyping of the MUC1 VNTR using short-read sequencing data. This site automatically extracts MUC1 data in your browser and uploads only the minimal subset needed for genotyping.

VNtyper Online Backend is a Dockerized pipeline that handles alignment-free MUC1 VNTR genotyping for autosomal dominant tubulointerstitial kidney disease (ADTKD). It exposes a frontend and REST API for job submission, orchestrates asynchronous tasks, and integrates multiple modules to streamline variant analysis for short-read sequencing data.