GREIN : GEO RNA-seq Experiments Interactive Navigator

A slurm based pipeline for RNA-seq analysis to execute on linux clusters. Feel free to connect to visualize your RNA-seq data on the clouds

SPEAQeasy: portable LIBD RNA-seq pipeline using Nextflow. Check http://research.libd.org/SPEAQeasy-example/ for an example on how to use this pipeline and analyze the resulting output files.

RNA-Seq analysis pipeline for investigating transcriptional changes during mammalian cardiac regeneration.

RNA-Seq Data Analysis in R: From Raw Counts to Differential Expression Analysis

Proof of concept of a RNA-Seq pipeline from reads to count matrix (including quality control) with Nextflow and additional example RNA-Seq analysis in R

Classification of RNA-Seq samples using circRNA expression

An in-house bioinformatic framework for bulk RNA-seq analysis