Avant-garde (AvG) is a new tool to refine Data-Independent Acquisition (and Parallel Reaction Monitoring) by removing interfered transitions, adjusting integration boundaries and scoring peaks to control the FDR.
Inspecting the quality of isobaric labeling proteomic data in a Jupyter notebook. Data output from Proteome Discoverer.
A bioinformatic resource made in the Cardiovascular Proteomics Lab at CNIC to build workflows for quantitative high-throughput proteomics, systems biology and the statistical analysis, integration and comparison of experiments.
Software used in combination with MascotToQuiXML to import spectral data from Mascot's MGF files to be used in QuiXoT by converting them into binStack binary files.
A software part of the QuiXoT software package used to analyse protein quantifications performed in the MS1-spectra (such as 18O/16O or SILAC).
A lightweight multi-purpose program to operate with XML files. Designed especially to manage large QuiXML files.
Data converter from a tab-separated text file to a QuiXML file to be used in QuiXoT.
A software for importing spectral data from Thermo RAW files to binStack format usable by QuiXoT.
Quantification and statistical analysis of quantitative proteomics experiments.
Python pipeline for Absolute Protein Quantification data analysis
Program used in combination with mgfToBinStack to import data from Mascot to be used in QuiXoT by converting Mascot's DAT files into QuiXML files.
GUI based on the alpaca proteomics pipeline for Absolute Protein Quantification data analysis
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