metamaden / methyPre Star 6 Code Issues Pull requests Methylation array preprocessing. bioconductor preprocessing combat normalization qc hg19 sva cpg hm450k illumina-bead-chip methylation-arrays minfi batch-correction swan-normalize illumina-normalize Updated Sep 6, 2018 R
chiaraherzog / IlluminaMouseMethylationanno.12.v1.mm10 Star 5 Code Issues Pull requests This package provides Illumina Mouse Methylation Array Annotation (12.v1, Genome Build mm10) compatible with minfi. bioinformatics illumina-bead-chip methylation-arrays minfi methylation-analysis methylation-annotation Updated Jul 11, 2024 R
markgene / maxprobes Star 4 Code Issues Pull requests Methylation Array Cross-Reactive Probes methylation methylation-microarrays methylation-arrays Updated Oct 19, 2018 R
stjude-biohackathon / MethylMiner Star 4 Code Issues Pull requests A methylation array analysis pipeline tailored for discovering rare methylation events with interactive data visualization bioinformatics-pipeline methylation-arrays methylation-analysis Updated Apr 30, 2024 Python
metamaden / InfiniumPurifyR Star 0 Code Issues Pull requests Estimate tumor enrichment from methylation array data. preprocessing qc hm450k illumina-bead-chip methylation-arrays tumor-purity Updated Dec 1, 2017 R