The repository contains all the code for the paper amino acid encoding using deep learning application

📂 HLA allele frequencies in tab-delimited format, downloaded from AFND.

HLA ARD Reduction in Python

A script to run HLA typing tools from next generation sequencing data

DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions

Python package for doing fast and accurate sequence annotation

TransHLA: A hybrid transformer model for peptide-HLA epitope detection.

Allele Calling Tool (ACT)

A tool for downloading HLA alleles, epitopes and frequencies

A pythonic library for analysing immunopeptidomic experiments

Python Eplet Load Calculator

The IMGT/HLA sequence data persisted in a BioSQL database

GAT (Generic Genome-Wide Association Tool)

the peptide immune annotator pipeline (PIA-P) a collection of bash and Python scripts used running peptide HLA interaction from a variety of inputs

A method for predicting promiscuous non-classical HLA binding sites in an antigen

Python package for working with HML

HLA ARD reduction in Python

Download aligned HLA gene sequences from IMGT website

Haplotype analysis tools for genomics studies