Cloud-native genomic dataframes and batch computing

Scalable genetics toolkit

Python command line tool for Multi-Trait Analysis of GWAS (MTAG)

Pan-genome wide association studies

SEER, reimplemented in python 🐍🔮

PolyFun (POLYgenic FUNctionally-informed fine-mapping)

Python API for comprehensive GWAS analysis using GEMMA

Convert GWAS summary statistics to VCF

A Python package for creating high-quality manhattan and Q-Q plots from GWAS results.

GWAS summary statistics files QC tool

kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.

Efficient Permutation-based GWAS for Normal and Skewed Phenotypic Distributions

A package for detecting epistasis by machine learning

Variational Inference of Polygenic Risk Scores

Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis

Heritability, genetic correlation and functional enrichment estimation for case-control studies

Framework for efficient high-dimensional association analyses.

GWAS QC, PCA, haplotype phasing, genotype imputation

Software to perform multi-ancestry SNP fine-mapping on molecular data