Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation
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Oct 15, 2024 - C++
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genome-alignment
Here are 7 public repositories matching this topic...
BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper
matrix-multiplication long-read read-aligners spgemm genome-alignment overlapper pacbio-aligner longread-aligner
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May 16, 2022 - C++
Fast and simple algorithms for computing both LCSk and LCSk+
bioinformatics algorithm string strings dynamic-programming string-matching lcs bioinformatics-algorithms genome-alignment lcsk lcskpp lcskp
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May 23, 2018 - C++
Maximum Acyclic Subgraph (MAS) - Multiple Sequence Alignment (MSA) Game
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Jul 9, 2019 - C++
command-line interface software for genome alignment
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Nov 15, 2020 - C++
PARMIK is a fast and memory-efficient tool for identifying the "Partial Match" region between two genomic sequences.
smith-waterman k-mer k-mer-frequency k-mer-hashing genome-analysis bwa-mem metagenomic-analysis blastn sratoolkit genome-alignment dna-processing environment-sampling
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Oct 18, 2024 - C++
a genome alignment library built around seed-and-extend algorithms for maximal exact and unique matches
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Nov 15, 2020 - C++
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