gdc-client

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Directions and code for generic GDC data downloads.

tcga gdc ncbi nih gdc-client genomic-data-commons pan-cancer-analysis

Singularity recipe for gdc-client

singularity gdc singularity-container gdc-client

Docker to run GDC Data Transfer Tool (gdc-client)

docker download-manager gdc-client

Use of RNAseq data from TCGA-BRCA and build a gene expression matrix (GEM) to map gene expression values across sample IDs.

rna-seq python3 gdc-client gene-expression-matrix

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