Genome Analysis Toolkit
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Updated
Dec 13, 2018 - R
#
gatk
Here are 7 public repositories matching this topic...
msgen: R functions for interfacing with the Microsoft Genomics service on Azure.
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May 8, 2021 - R
This repository contains bash shell scripts
gatk shell-script variant-calling bash-script ngs-pipeline tuxedo-1 tophat2-htseq-fc tophat2-cufflinks
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Jun 7, 2018 - R
A streamlined pipeline for germline variant calling on chromosome 11 using GATK. This repository includes workflows for data preprocessing, variant discovery, and annotation, with a focus on understanding genetic variations linked to disease-associated genes.
bioinformatics snps vcf gatk variant-calling bam population-genetics samtools bwa genome-analysis indels bcftools variant-annotation reference-genome exome-sequencing 1000genomes snpeff haplotypecaller human-genome gatk4-haplotypecaller
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Nov 26, 2024 - R
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Mar 17, 2017 - R
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