This repository contains scripts and detailed information for microarray-based transcriptomic analysis using NCBI GEO data for the course project.

A SHINY app written in R that will perform differential expression and feature selection on RNA_SEQ data(counts matrix and phenotype data) . The app allow can prepare a PCA plot of your data, a UMAP plot , a volcano plot showing the relationship between log fold change and p-value of your top 20 genes .It also can perform pathway analysis .