RNA-seq workflow using STAR and DESeq2

Feature-rich Python implementation of the tximport package for gene count estimation.

Perform differential analysis from FastQ files with Salmon, tximport, and DESeq2

Iteratively randomly pooling scRNA-seq expressing a given gene from different numbers of cells and running DESeq2 with fdrtools correction to determine how many times which genes come out as enriched with said gene

Workflow to simulate an RNA-seq reads and perform DE-analysis

Analysing RNA sequencing data with DESeq2.

This repository contains an example implementation of DESeq2 in Python.

Some useful scripts useful for parsing or writing DESeq2 Scripts