Associate Director at Sage Bionetworks
bridging the gap between science and engineering one pull request at a time
this is my playground
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Sage-Bionetworks/synapsePythonClient
Sage-Bionetworks/synapsePythonClient PublicProgrammatic interface to Synapse services for Python
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Sage-Bionetworks/snowflake
Sage-Bionetworks/snowflake PublicSnowflake Administration, Transformations, and Analytics
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Sage-Bionetworks/synapser
Sage-Bionetworks/synapser PublicAn R package providing programmatic access to Synapse
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Sage-Bionetworks/Genie
Sage-Bionetworks/Genie PublicValidation and processing of GENIE files
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Sage-Bionetworks-Workflows/py-dcqc
Sage-Bionetworks-Workflows/py-dcqc PublicPython package for performing quality control (QC) for data coordination (DC)
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Sage-Bionetworks-Workflows/py-orca
Sage-Bionetworks-Workflows/py-orca PublicPython package for connecting services and building data pipelines
1,151 contributions in the last year
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Activity overview
Contributed to
Sage-Bionetworks/snowflake,
Sage-Bionetworks/schematic,
Sage-Bionetworks/genie-bpc-pipeline
and 50 other
repositories
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Contribution activity
April 2025
Created 4 commits in 3 repositories
Created a pull request in Sage-Bionetworks-Workflows/nf-genie that received 21 comments
[GEN-1833, GEN-1865] Convert Data guide to Python & quarto
Problem: The data guide image needs to be re-built every year due to tinytex libraries being updated from 2024 -> 2025 R dependencies are not the …
+1,070
−67
lines changed
•
21
comments
Opened 2 other pull requests in 2 repositories
Sage-Bionetworks-Workflows/nf-genie
1
merged
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[GEN-1909] Customize copy_recursive function because access requirements are now added to the data
This contribution was made on Apr 14
Sage-Bionetworks/Genie
1
open
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Add mermaid flowchart diagram for the input to database / consortium release steps
This contribution was made on Apr 13
Reviewed 42 pull requests in 16 repositories
Sage-Bionetworks/schematic
12 pull requests
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update lock file
This contribution was made on Apr 16
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[Schematic 272] Standardize Id, entityId, uuid (deprecated) before manifest submission
This contribution was made on Apr 14
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[Schematic-272] updated documentation to warn users the reserved word in schematic; added more instructions in trouble shooting guide
This contribution was made on Apr 14
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[schematic-279] Avoid comparing trail white space when comparing jsonld in test
This contribution was made on Apr 11
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[SCHEMATIC-264] Additional validation rules documentation fixes
This contribution was made on Apr 10
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update test.yml ubuntu runner
This contribution was made on Apr 8
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[SCHEMATIC-264] Added validation rules doc
This contribution was made on Apr 8
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[SCHEMATIC-249] Update README.md and update documentation
This contribution was made on Apr 7
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Schematic 253 validation documentation
This contribution was made on Apr 3
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[SCHEMATIC-250] Add markdown file linking to LinkML docs
This contribution was made on Apr 3
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[schematic-254] added documentation for manifest submission
This contribution was made on Apr 3
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Add pull request template
This contribution was made on Apr 1
Sage-Bionetworks/snowflake
7 pull requests
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Move synapse_aggregate ownership grants
This contribution was made on Apr 15
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Merge dev into main
This contribution was made on Apr 14
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Drop tables used for testing
This contribution was made on Apr 14
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Update CONTRIBUTING.md
This contribution was made on Apr 14
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[SNOW-266] SYNAPSE_AGGREGATE schema
This contribution was made on Apr 10
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[SNOW-90] Introduce CI/CD pipeline
This contribution was made on Apr 7
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[SNOW-40] Drop stream, tasks, old table for certifiedquiz_latest and finalize integration (PR 2/2)
This contribution was made on Apr 3
Sage-Bionetworks/synapsePythonClient
6 pull requests
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[SYNPY-1497] refactored version check to use Pypi for version info
This contribution was made on Apr 17
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[SYNPY-1578]
DatasetCollection
OOP ModelThis contribution was made on Apr 17 -
[SYNPY-1579] Introduce the materialized view
This contribution was made on Apr 14
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Add Multi-Profile Support
This contribution was made on Apr 10
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Include a default timeout for HTTP requests library to 70 seconds
This contribution was made on Apr 4
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[SYNPY-1575] Introduce EntityView model
This contribution was made on Apr 1
Sage-Bionetworks-Workflows/orca-recipes
4 pull requests
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[DPE-1266] Challenge DAG Refactor + Introduce Olfactory Challenge DAG
This contribution was made on Apr 17
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[DPE-1275] Move to Synapse API, Automate deletion of S3 objects/Synapse Rows, File/Dataset versioning corrections
This contribution was made on Apr 8
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[DPE-1275] Include content type and additional fields
This contribution was made on Apr 7
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[snow-270] Update all snowflake authentication DAGs
This contribution was made on Apr 2
Sage-Bionetworks-Workflows/nf-genie
2 pull requests
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[GEN-1909] Customize copy_recursive function because access requirements are now added to the data
This contribution was made on Apr 15
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[GEN-1833, GEN-1865] Convert Data guide to Python & quarto
This contribution was made on Apr 14
Sage-Bionetworks/Genie
1 pull request
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Add mermaid flowchart diagram for the input to database / consortium release steps
This contribution was made on Apr 15
Sage-Bionetworks/recover
1 pull request
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[ETL-703] Upgrade worker type of HealthKitV2Statistics
This contribution was made on Apr 14
Sage-Bionetworks-Workflows/eks-stack
1 pull request
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[PORTALS-3539] Support enabling cors for S3 bucket
This contribution was made on Apr 10
Sage-Bionetworks/GENIE-Sponsored-Projects
1 pull request
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[GEN-1859] Add toggle to use cpt_seq_date form derived variables for replacement
This contribution was made on Apr 10
Sage-Bionetworks/synapse-web-monorepo
1 pull request
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PORTALS-3407 - Add CreateOrUpdateDoiModal
This contribution was made on Apr 9
Sage-Bionetworks/genie-bpc-pipeline
1 pull request
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[GEN-1774] Add ability to replace with the non _DETAILED tier1a columns
This contribution was made on Apr 8
Sage-Bionetworks-Workflows/nextflow-infra
1 pull request
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Update cost center to CTF Amend 10
This contribution was made on Apr 7
Sage-Bionetworks-Workflows/py-orca
1 pull request
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[DPE-1275] Skip checks on creation of Syn client
This contribution was made on Apr 4
Sage-Bionetworks-Workflows/nf-synapse-challenge
1 pull request
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[DPE-1240] Updates Entrypoint Handling
This contribution was made on Apr 4
Sage-Bionetworks-Workflows/nf-synapse
1 pull request
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[DPE-1240] Updates Entrypoint handling
This contribution was made on Apr 3
Sage-Bionetworks/schematic_profiler
1 pull request
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Add pull request template
This contribution was made on Apr 1