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1. DESeq2 DESeq2 Public

   Differential expression of RNA-seq data using the Negative Binomial

   R 383 93

2. fishpond fishpond Public

   Differential expression and allelic analysis, nonparametric statistics

   R 28 10

3. tximport tximport Public

   Transcript quantification import for modular pipelines

   R 138 34

4. tximeta tximeta Public

   Transcript quantification import with automatic metadata detection

   R 67 11

5. rnaseqGene rnaseqGene Public

   RNA-seq workflow: exploratory analysis and differential expression

   TeX 75 41

6. rnaseqDTU rnaseqDTU Public

   RNA-seq workflow: differential transcript usage

   TeX 21 11