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[Transfer_Column_Content] Workflow fails silently when permissions issues encountered #642

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emily-smith1 opened this issue Oct 4, 2024 · 2 comments · Fixed by #666
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@emily-smith1
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🐛

📝 Describe the Issue

The workflow passes when files are unable to be transferred due to permissions issues. Users are running into errors when submitting reads to NCBI, as they are expecting read files to be in the bucket since the workflow passed, but NCBI can't find them.

@emily-smith1
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@sage-wright
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could address this with set -euo pipefail. I might go ahead and make a PR that does this for a whole bunch of tasks

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