Automated changes for post-release 2022.11.17

tardis-sn · Nov 17, 2022 · c4e199d · c4e199d
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,5 +1,54 @@
 ## Change Log
 
+### release-2022.11.17 (2022/11/17 18:45 +00:00)
+- [#2155](https://github.com/tardis-sn/tardis/pull/2155) Pre-release 2022.11.17 (#2155) (@tardis-bot)
+- [#2152](https://github.com/tardis-sn/tardis/pull/2152) Set specific qgrid feedstock version (#2152) (@andrewfullard)
+- [#2140](https://github.com/tardis-sn/tardis/pull/2140) Adding nlte_rate_equation_solver.py (#2140) (@sonachitchyan)
+- [#2147](https://github.com/tardis-sn/tardis/pull/2147) Pin setuptools_scm to v6 (#2147) (@epassaro)
+- [#2127](https://github.com/tardis-sn/tardis/pull/2127) Possible fix for prerelease workflow (#2127) (@andrewfullard)
+- [#2146](https://github.com/tardis-sn/tardis/pull/2146) Add missing cell to download atom data (#2146) (@epassaro)
+- [#2136](https://github.com/tardis-sn/tardis/pull/2136) Restructuring NumbaModel (#2136) (@code-explorer)
+- [#2132](https://github.com/tardis-sn/tardis/pull/2132) Adding rate matrix index (#2132) (@sonachitchyan)
+- [#2130](https://github.com/tardis-sn/tardis/pull/2130) moved helium nlte to a seperate file `helium_nlte.py` (#2130) (@sonachitchyan)
+- [#2124](https://github.com/tardis-sn/tardis/pull/2124) Cleaning model state (#2124) (@code-explorer)
+- [#2096](https://github.com/tardis-sn/tardis/pull/2096) Small bug fix for He NLTE. (#2096) (@aoife-boyle)
+- [#1923](https://github.com/tardis-sn/tardis/pull/1923) Fixing latex_label Parameter within write_to_tex function (#1923) (@bartnikm)
+- [#2095](https://github.com/tardis-sn/tardis/pull/2095) Removing outdated documentation and creating developer tools section (#2095) (@smithis7)
+- [#2099](https://github.com/tardis-sn/tardis/pull/2099) Arbitrary isotope decay handling and positronium (#2099) (@andrewfullard)
+- [#2118](https://github.com/tardis-sn/tardis/pull/2118) Integrating experimental model state (#2118) (@code-explorer)
+- [#2120](https://github.com/tardis-sn/tardis/pull/2120) Update arepo docs notebook to be pre-run (#2120) (@AlexHls)
+- [#2115](https://github.com/tardis-sn/tardis/pull/2115) added docs for montecarlo packet visualization (#2115) (@jayantbhakar)
+- [#2117](https://github.com/tardis-sn/tardis/pull/2117) Runs cells in arepo notebook to avoid downloading files (#2117) (@andrewfullard)
+- [#2103](https://github.com/tardis-sn/tardis/pull/2103) New geometry class (#2103) (@code-explorer)
+- [#2111](https://github.com/tardis-sn/tardis/pull/2111) New TARDIS flowchart and cleaning up physics walkthrough (#2111) (@smithis7)
+- [#2098](https://github.com/tardis-sn/tardis/pull/2098) New Composition Class (#2098) (@code-explorer)
+- [#2108](https://github.com/tardis-sn/tardis/pull/2108) Rework Estimators and Convergence Docs (#2108) (@smithis7)
+- [#2105](https://github.com/tardis-sn/tardis/pull/2105) Documentation for Features In-Progress (#2105) (@smithis7)
+- [#2107](https://github.com/tardis-sn/tardis/pull/2107) Added positronium notes (#2107) (@andrewfullard)
+- [#2091](https://github.com/tardis-sn/tardis/pull/2091) Added interaction type in rpacket_tracker (#2091) (@jayantbhakar)
+- [#2110](https://github.com/tardis-sn/tardis/pull/2110) removed scatter function from interaction.py (#2110) (@sonachitchyan)
+- [#2106](https://github.com/tardis-sn/tardis/pull/2106) Resturcture ABCs import from collections module (#2106) (@rohithvarma3000)
+- [#2093](https://github.com/tardis-sn/tardis/pull/2093) Fixing Docs Warnings (#2093) (@smithis7)
+- [#2073](https://github.com/tardis-sn/tardis/pull/2073) rpacket_tracker returns dataframe (#2073) (@jayantbhakar)
+- [#2104](https://github.com/tardis-sn/tardis/pull/2104) Re-produced PR 1826 (#2104) (@andrewfullard)
+- [#2097](https://github.com/tardis-sn/tardis/pull/2097) Creating new docs building instructions (#2097) (@smithis7)
+- [#2088](https://github.com/tardis-sn/tardis/pull/2088) Arepo docs fix (#2088) (@AlexHls)
+- [#1941](https://github.com/tardis-sn/tardis/pull/1941) Improved arepo parser (#1941) (@AlexHls)
+- [#2026](https://github.com/tardis-sn/tardis/pull/2026) Adding physics introduction to documentation (#2026) (@smithis7)
+- [#2084](https://github.com/tardis-sn/tardis/pull/2084) Fix broken links in workflow files and goverance md (#2084) (@rohithvarma3000)
+- [#2083](https://github.com/tardis-sn/tardis/pull/2083) Moved `trace_packet` to tardis tansport (#2083) (@Rodot-)
+- [#2082](https://github.com/tardis-sn/tardis/pull/2082) Added documetation on how to compare environment before update (#2082) (@jaladh-singhal)
+- [#2076](https://github.com/tardis-sn/tardis/pull/2076) Modified Function Name in Config validator according to PEP8 (#2076) (@rohithvarma3000)
+- [#2062](https://github.com/tardis-sn/tardis/pull/2062) Remove yaml_load_config_file (#2062) (@aman1971)
+- [#2052](https://github.com/tardis-sn/tardis/pull/2052) Created a smart HDF Reader which can re-produce simulation object (#2052) (@code-explorer)
+- [#2070](https://github.com/tardis-sn/tardis/pull/2070) Pre-release 2022.06.26 (#2070) (@tardis-bot)
+- [#2069](https://github.com/tardis-sn/tardis/pull/2069) Wait for pull request creation (#2069) (@epassaro)
+- [#2067](https://github.com/tardis-sn/tardis/pull/2067) Begin geometry subfolder (#2067) (@nolanbrown01)
+- [#2050](https://github.com/tardis-sn/tardis/pull/2050) Update Jsonschema package to V4 (#2050) (@rohithvarma3000)
+- [#2065](https://github.com/tardis-sn/tardis/pull/2065) Continuing geometry restructure (#2065) (@nolanbrown01)
+- [#2063](https://github.com/tardis-sn/tardis/pull/2063) Initial geometry restructure (#2063) (@nolanbrown01)
+- [#2061](https://github.com/tardis-sn/tardis/pull/2061) Post-release 2022.06.19 (#2061) (@tardis-bot)
+
 ### release-2022.06.19 (2022/06/19 02:25 +00:00)
 - [#2060](https://github.com/tardis-sn/tardis/pull/2060) Pre-release 2022.06.19 (#2060) (@tardis-bot)
 - [#2036](https://github.com/tardis-sn/tardis/pull/2036) Restructure code to remove the single_packet_seed field (#2036) (@rohithvarma3000)
@@ -596,8 +645,6 @@
 - [#1018](https://github.com/tardis-sn/tardis/pull/1018) Updated .mailmap (#1018) (@epassaro)
 - [#1010](https://github.com/tardis-sn/tardis/pull/1010) Pipeline for comparing reference data (#1010) (@epassaro)
 - [#1016](https://github.com/tardis-sn/tardis/pull/1016) Removed GH Action for release versions (#1016) (@epassaro)
-
-### 3.0.dev3388 (2020/01/25 22:36 +00:00)
 - [#1013](https://github.com/tardis-sn/tardis/pull/1013) Fixed typo (#1013) (@epassaro)
 - [#1006](https://github.com/tardis-sn/tardis/pull/1006) Trying to get the right version number for automatic release (#1006) (@epassaro)
 - [#1008](https://github.com/tardis-sn/tardis/pull/1008) Improvements for the update_reference section [docs] (#1008) (@epassaro)

diff --git a/CITATION.cff b/CITATION.cff
@@ -3,8 +3,8 @@
 cff-version: 1.0.3
 message: If you use this software, please cite it using these metadata.
 # FIXME title as repository name might not be the best name, please make human readable
-title: 'tardis-sn/tardis: TARDIS v2022.06.19'
-doi: 10.5281/zenodo.6662839
+title: 'tardis-sn/tardis: TARDIS v2022.11.17'
+doi: 10.5281/zenodo.7331855
 # FIXME splitting of full names is error prone, please check if given/family name are correct
 authors:
 - given-names: Wolfgang
@@ -81,10 +81,10 @@ authors:
   family-names: Fullard
   affiliation: Michigan State University
   orcid: https://orcid.org/0000-0001-7343-1678
-- given-names: Kevin
-  family-names: Cawley
 - given-names: Isaac
   family-names: Smith
+- given-names: Kevin
+  family-names: Cawley
 - given-names: Jaladh
   family-names: Singhal
   orcid: https://orcid.org/0000-0002-8310-0829
@@ -107,101 +107,105 @@ authors:
   orcid: https://orcid.org/0000-0002-8094-6108
 - given-names: Arjun
   family-names: Savel
-- given-names: Youssef
-  family-names: Eweis
 - given-names: Martin
   family-names: Reinecke
+- given-names: Youssef
+  family-names: Eweis
 - given-names: Tomas
   family-names: Bylund
 - given-names: Laud
   family-names: Bentil
+- given-names: Sona
+  family-names: Chitchyan
 - given-names: Jordi
   family-names: Eguren
   orcid: https://orcid.org/0000-0002-2328-8030
 - given-names: Arib
   family-names: Alam
 - given-names: Matthew
   family-names: Bartnik
+- given-names: Rohith
+  family-names: Varma Buddaraju
 - given-names: Mark
   family-names: Magee
 - given-names: Joshua
   family-names: Shields
 - given-names: Ran
   family-names: Livneh
-- given-names: Sona
-  family-names: Chitchyan
-- given-names: Srinath
-  family-names: Rajagopalan
+- given-names: Satwik
+  family-names: Kambham
 - given-names: Sashank
   family-names: Mishra
   orcid: https://orcid.org/0000-0001-8302-1584
-- given-names: Andreas
-  family-names: Floers
-- given-names: John
-  family-names: Reichenbach
+- given-names: Srinath
+  family-names: Rajagopalan
 - given-names: Rinkle
   family-names: Jain
+- given-names: John
+  family-names: Reichenbach
+- given-names: Andreas
+  family-names: Floers
+- given-names: Alexander
+  family-names: Holas
+- given-names: Jayant
+  family-names: Bhakar
 - given-names: Antreev
   family-names: Brar
 - given-names: Sourav
   family-names: Singh
-- given-names: Caroline
-  family-names: Sofiatti
 - given-names: Nathan
   family-names: Kowalski
+- given-names: Aman
+  family-names: Kumar
 - given-names: Chinmay
   family-names: Talegaonkar
+- given-names: Caroline
+  family-names: Sofiatti
 - given-names: Jonatan
   family-names: Selsing
-- given-names: Parikshit
-  family-names: Singh Rathore
-- given-names: Shilpi
-  family-names: Prasad
 - given-names: Shashank
   family-names: Venkat
-- given-names: Rohith
-  family-names: Varma Buddaraju
+- given-names: Nilesh
+  family-names: Patra
 - given-names: Pratik
   family-names: Patel
+- given-names: Dmitry
+  family-names: Volodin
+- given-names: Parikshit
+  family-names: Singh Rathore
 - given-names: Kevin
   family-names: Yap
-- given-names: Nilesh
-  family-names: Patra
 - given-names: Nance
   family-names: Sarafina
 - given-names: Musabbiha
   family-names: Zaheer
 - given-names: Morgan
   family-names: Sandler
-- given-names: Thom
-  family-names: Lemoine
 - given-names: Suyash
   family-names: Gupta
-- given-names: Ashwin
-  family-names: Nayak U
+- given-names: Shilpi
+  family-names: Prasad
+- given-names: Atul
+  family-names: Kumar
+- given-names: Thom
+  family-names: Lemoine
 - given-names: Ujjwal
   family-names: Wahi
 - given-names: Yash
   family-names: Aggarwal
-- given-names: aman
-  family-names: kumar
 - given-names: Sampark
   family-names: Sharma
-- given-names: Dmitry
-  family-names: Volodin
-- given-names: Laureano
-  family-names: Martinez
 - given-names: Debajyoti
   family-names: Dasgupta
-- given-names: Alexander
-  family-names: Holas
-- given-names: Atharwa
-  family-names: Kharkar
+- given-names: Laureano
+  family-names: Martinez
 - given-names: Chaitanya
   family-names: Kolliboyina
-- given-names: Atul
-  family-names: Kumar
-version: release-2022.06.19
-date-released: 2022-06-19
+- given-names: Ashwin
+  family-names: Nayak U
+- given-names: Atharwa
+  family-names: Kharkar
+version: release-2022.11.17
+date-released: 2022-11-17
 repository-code: https://github.com/tardis-sn/tardis
 license: other-open
diff --git a/README.rst b/README.rst
@@ -110,14 +110,14 @@ The following BibTeX entries are needed for the references:
           adsnote = {Provided by the SAO/NASA Astrophysics Data System}
     }
 
-.. |CITATION| replace:: kerzendorf_wolfgang_2022_6662839
+.. |CITATION| replace:: kerzendorf_wolfgang_2022_7331855
 
-.. |DOI_BADGE| image:: https://img.shields.io/badge/DOI-10.5281/zenodo.6662839-blue
-                 :target: https://doi.org/10.5281/zenodo.6662839
+.. |DOI_BADGE| image:: https://img.shields.io/badge/DOI-10.5281/zenodo.7331855-blue
+                 :target: https://doi.org/10.5281/zenodo.7331855
 
 .. code-block:: bibtex
 
-    @software{kerzendorf_wolfgang_2022_6662839,
+    @software{kerzendorf_wolfgang_2022_7331855,
       author       = {Kerzendorf, Wolfgang and
                       Sim, Stuart and
                       Vogl, Christian and
@@ -142,8 +142,8 @@ The following BibTeX entries are needed for the references:
                       Barna, Barnabás and
                       Gautam, Gaurav and
                       Fullard, Andrew and
-                      Cawley, Kevin and
                       Smith, Isaac and
+                      Cawley, Kevin and
                       Singhal, Jaladh and
                       Arya, Atharva and
                       Barbosa, Talytha and
@@ -154,59 +154,61 @@ The following BibTeX entries are needed for the references:
                       Varanasi, Kaushik and
                       Gillanders, James and
                       Savel, Arjun and
-                      Eweis, Youssef and
                       Reinecke, Martin and
+                      Eweis, Youssef and
                       Bylund, Tomas and
                       Bentil, Laud and
+                      Chitchyan, Sona and
                       Eguren, Jordi and
                       Alam, Arib and
                       Bartnik, Matthew and
+                      Varma Buddaraju, Rohith and
                       Magee, Mark and
                       Shields, Joshua and
                       Livneh, Ran and
-                      Chitchyan, Sona and
-                      Rajagopalan, Srinath and
+                      Kambham, Satwik and
                       Mishra, Sashank and
-                      Floers, Andreas and
-                      Reichenbach, John and
+                      Rajagopalan, Srinath and
                       Jain, Rinkle and
+                      Reichenbach, John and
+                      Floers, Andreas and
+                      Holas, Alexander and
+                      Bhakar, Jayant and
                       Brar, Antreev and
                       Singh, Sourav and
-                      Sofiatti, Caroline and
                       Kowalski, Nathan and
+                      Kumar, Aman and
                       Talegaonkar, Chinmay and
+                      Sofiatti, Caroline and
                       Selsing, Jonatan and
-                      Singh Rathore, Parikshit and
-                      Prasad, Shilpi and
                       Venkat, Shashank and
-                      Varma Buddaraju, Rohith and
+                      Patra, Nilesh and
                       Patel, Pratik and
+                      Volodin, Dmitry and
+                      Singh Rathore, Parikshit and
                       Yap, Kevin and
-                      Patra, Nilesh and
                       Sarafina, Nance and
                       Zaheer, Musabbiha and
                       Sandler, Morgan and
-                      Lemoine, Thom and
                       Gupta, Suyash and
-                      Nayak U, Ashwin and
+                      Prasad, Shilpi and
+                      Kumar, Atul and
+                      Lemoine, Thom and
                       Wahi, Ujjwal and
                       Aggarwal, Yash and
-                      kumar, aman and
                       Sharma, Sampark and
-                      Volodin, Dmitry and
-                      Martinez, Laureano and
                       Dasgupta, Debajyoti and
-                      Holas, Alexander and
-                      Kharkar, Atharwa and
+                      Martinez, Laureano and
                       Kolliboyina, Chaitanya and
-                      Kumar, Atul},
-      title        = {tardis-sn/tardis: TARDIS v2022.06.19},
-      month        = jun,
+                      Nayak U, Ashwin and
+                      Kharkar, Atharwa},
+      title        = {tardis-sn/tardis: TARDIS v2022.11.17},
+      month        = nov,
       year         = 2022,
       publisher    = {Zenodo},
-      version      = {release-2022.06.19},
-      doi          = {10.5281/zenodo.6662839},
-      url          = {https://doi.org/10.5281/zenodo.6662839}
+      version      = {release-2022.11.17},
+      doi          = {10.5281/zenodo.7331855},
+      url          = {https://doi.org/10.5281/zenodo.7331855}
     }
 
 *******