Automated changes for post-release 2022.05.04

tardis-sn · May 4, 2022 · 869235e · 869235e
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,5 +1,125 @@
 ## Change Log
 
+### release-2022.05.04 (2022/05/04 16:35 +00:00)
+- [#2005](https://github.com/tardis-sn/tardis/pull/2005) Automated changes for pre-release 2022.05.04 (#2005) (@tardis-bot)
+- [#2003](https://github.com/tardis-sn/tardis/pull/2003) Fix for isotope abundance parsing (#2003) (@Rodot-)
+- [#1995](https://github.com/tardis-sn/tardis/pull/1995) Force constant version date length (#1995) (@epassaro)
+- [#1999](https://github.com/tardis-sn/tardis/pull/1999) Create TARDIS release workflow (#1999) (@epassaro)
+- [#2001](https://github.com/tardis-sn/tardis/pull/2001) Post-release workflow (#2001) (@epassaro)
+- [#2000](https://github.com/tardis-sn/tardis/pull/2000) Update build-docs.yml (#2000) (@smithis7)
+- [#1998](https://github.com/tardis-sn/tardis/pull/1998) Fix concurrency groups in workflows (#1998) (@epassaro)
+- [#1987](https://github.com/tardis-sn/tardis/pull/1987) Better documentation build workflow from 2021 GA Hackathon (#1987) (@epassaro)
+- [#1989](https://github.com/tardis-sn/tardis/pull/1989) Pre-release workflow (#1989) (@epassaro)
+- [#1988](https://github.com/tardis-sn/tardis/pull/1988) Use Azure mirror for reference data in testing pipeline (#1988) (@epassaro)
+- [#1978](https://github.com/tardis-sn/tardis/pull/1978) Plasma number densities using isotopes (#1978) (@andrewfullard)
+- [#1985](https://github.com/tardis-sn/tardis/pull/1985) Migrate testing pipeline to GitHub Actions (#1985) (@epassaro)
+- [#1981](https://github.com/tardis-sn/tardis/pull/1981) Better docstring coverage workflow from 2021 GA Hackathon (#1981) (@epassaro)
+- [#1980](https://github.com/tardis-sn/tardis/pull/1980) Check Black format on `master` branch (#1980) (@epassaro)
+- [#1982](https://github.com/tardis-sn/tardis/pull/1982) Add bot comment with directions to update .mailmap (#1982) (@epassaro)
+- [#1973](https://github.com/tardis-sn/tardis/pull/1973) deploy environment with spec file; add aliases to mailmap (#1973) (@epassaro)
+- [#1983](https://github.com/tardis-sn/tardis/pull/1983) Remove files already superseded by templates (#1983) (@epassaro)
+- [#1977](https://github.com/tardis-sn/tardis/pull/1977) Ignore more Black commits (#1977) (@epassaro)
+- [#1971](https://github.com/tardis-sn/tardis/pull/1971) Blackify TARDIS again (#1971) (@epassaro)
+- [#1974](https://github.com/tardis-sn/tardis/pull/1974) Add disclaimer to environment file regarding conda-forge recipe (#1974) (@epassaro)
+- [#1970](https://github.com/tardis-sn/tardis/pull/1970) Remove pull request bot comment workflow (#1970) (@epassaro)
+- [#1969](https://github.com/tardis-sn/tardis/pull/1969) Fix docs build after upgrading conda environment (#1969) (@wkerzendorf)
+
+### release-2022.4.24 (2022/04/22 00:19 +00:00)
+- [#1933](https://github.com/tardis-sn/tardis/pull/1933) Intensity p rays (#1933) (@Rodot-)
+- [#1948](https://github.com/tardis-sn/tardis/pull/1948) Update TARDIS environment after replacing PyNE (#1948) (@epassaro)
+- [#1957](https://github.com/tardis-sn/tardis/pull/1957) Removing Levels Index Variable Within Atomic Data Preperation (#1957) (@bartnikm)
+- [#1968](https://github.com/tardis-sn/tardis/pull/1968) fixed index type in Saha solver documentation (#1968) (@afloers)
+- [#1959](https://github.com/tardis-sn/tardis/pull/1959) disable mamba on azure pipelines (#1959) (@epassaro)
+- [#1967](https://github.com/tardis-sn/tardis/pull/1967) Logging/csvy parsers errors (#1967) (@wkerzendorf)
+- [#1813](https://github.com/tardis-sn/tardis/pull/1813) Replacing PyNE with radioactivedecay for radionuclide decay calculations (#1813) (@lemointm)
+
+### release-2022.4.1 (2022/04/07 14:38 +00:00)
+- [#1925](https://github.com/tardis-sn/tardis/pull/1925) Plasma Graph Tutorial (#1925) (@bartnikm)
+
+### release-2022.4.3 (2022/03/28 14:30 +00:00)
+- [#1899](https://github.com/tardis-sn/tardis/pull/1899) Filtering Levels Parameter within Plasma Calculations (#1899) (@bartnikm)
+- [#1920](https://github.com/tardis-sn/tardis/pull/1920) Estimators and Convergence Documentation (#1920) (@smithis7)
+- [#1938](https://github.com/tardis-sn/tardis/pull/1938) Pin Jinja version (#1938) (@smithis7)
+
+### release-2022.3.27 (2022/03/23 15:51 +00:00)
+- [#1928](https://github.com/tardis-sn/tardis/pull/1928) Fixing various physics documentation issues (#1928) (@smithis7)
+
+### release-2022.3.2 (2022/03/14 15:16 +00:00)
+- [#1898](https://github.com/tardis-sn/tardis/pull/1898) making changes to estimators (#1898) (@smithis7)
+
+### release-2022.3.13 (2022/03/10 15:35 +00:00)
+- [#1922](https://github.com/tardis-sn/tardis/pull/1922) Fixing documentation links and misc. API documentation fixes (#1922) (@smithis7)
+
+### release-2022.3.6 (2022/03/03 19:21 +00:00)
+- [#1919](https://github.com/tardis-sn/tardis/pull/1919) GPU Options (#1919) (@KevinCawley)
+- [#1918](https://github.com/tardis-sn/tardis/pull/1918) Fix documentation build failure due to PR #1823 (#1918) (@atharva-2001)
+- [#1917](https://github.com/tardis-sn/tardis/pull/1917) Continuum Opacities (#1917) (@Rodot-)
+- [#1823](https://github.com/tardis-sn/tardis/pull/1823) Disable Convergence Plots by default (#1823) (@atharva-2001)
+- [#1914](https://github.com/tardis-sn/tardis/pull/1914) add continuum tracer (#1914) (@wkerzendorf)
+
+### release-2022.2.27 (2022/02/24 21:00 +00:00)
+- [#1886](https://github.com/tardis-sn/tardis/pull/1886) Continuum branch [attempted merge with master] (#1886) (@wkerzendorf)
+- [#1907](https://github.com/tardis-sn/tardis/pull/1907) Add note on GPU selection to formal integral (#1907) (@KevinCawley)
+- [#1710](https://github.com/tardis-sn/tardis/pull/1710) Changed Formatting for the logger based on Log Level (#1710) (@DhruvSondhi)
+- [#1901](https://github.com/tardis-sn/tardis/pull/1901) Fix PyTest fixtures and updated mainloop to properly compile (#1901) (@Rodot-)
+- [#1900](https://github.com/tardis-sn/tardis/pull/1900) Make update-refdata pipeline open a PR instead of merging changes (#1900) (@epassaro)
+
+### release-2022.2.2 (2022/02/17 20:14 +00:00)
+- [#1837](https://github.com/tardis-sn/tardis/pull/1837) CUDA Version of the Formal Integral (#1837) (@KevinCawley)
+- [#1891](https://github.com/tardis-sn/tardis/pull/1891) Fixing Broken Latex Code (#1891) (@bartnikm)
+- [#1868](https://github.com/tardis-sn/tardis/pull/1868) Fixing Plasma Graph to Allow .dot and .tex file Generation (#1868) (@bartnikm)
+- [#1893](https://github.com/tardis-sn/tardis/pull/1893) Fixing small docs issues (#1893) (@smithis7)
+
+### release-2022.2.6 (2022/02/02 17:16 +00:00)
+- [#1888](https://github.com/tardis-sn/tardis/pull/1888) Pin Black (#1888) (@atharva-2001)
+- [#1881](https://github.com/tardis-sn/tardis/pull/1881) Changed to append `seed` & `index` values only once for a particular `RPacketTracker` instance  (#1881) (@DhruvSondhi)
+
+### release-2022.1.3 (2022/01/29 13:59 +00:00)
+- [#1877](https://github.com/tardis-sn/tardis/pull/1877) printing packet information (#1877) (@wkerzendorf)
+- [#1867](https://github.com/tardis-sn/tardis/pull/1867) Arepo parser (#1867) (@AlexHls)
+- [#1843](https://github.com/tardis-sn/tardis/pull/1843) Changed default Log level to INFO (#1843) (@DhruvSondhi)
+- [#1849](https://github.com/tardis-sn/tardis/pull/1849) Interactive docs for models (#1849) (@smithis7)
+- [#1876](https://github.com/tardis-sn/tardis/pull/1876) fixed pytest tardis command in documentation (#1876) (@afloers)
+- [#1874](https://github.com/tardis-sn/tardis/pull/1874) move transport related parts to r_packet_transport (#1874) (@wkerzendorf)
+- [#1872](https://github.com/tardis-sn/tardis/pull/1872) Fix links in the code of conduct (#1872) (@smithis7)
+- [#1847](https://github.com/tardis-sn/tardis/pull/1847) Add a ModelState class (#1847) (@atharva-2001)
+
+### release-2022.1.23 (2022/01/21 16:50 +00:00)
+- [#1865](https://github.com/tardis-sn/tardis/pull/1865) fixing links (#1865) (@smithis7)
+- [#1866](https://github.com/tardis-sn/tardis/pull/1866) Refactor `test_configuration_namespace.py` (#1866) (@atharva-2001)
+- [#1861](https://github.com/tardis-sn/tardis/pull/1861) Renamed `RPacketCollection` Class to `RPacketTracker` (#1861) (@DhruvSondhi)
+
+### release-2022.1.16 (2022/01/12 15:11 +00:00)
+- [#1827](https://github.com/tardis-sn/tardis/pull/1827) Adding Explanations to Spectrum Configuration (#1827) (@bartnikm)
+- [#1752](https://github.com/tardis-sn/tardis/pull/1752) Add tests to SDEC plotter module (#1752) (@jaladh-singhal)
+- [#1848](https://github.com/tardis-sn/tardis/pull/1848) Switching progress bars page to rst (#1848) (@smithis7)
+
+### release-2022.1.9 (2022/01/06 15:59 +00:00)
+- [#1846](https://github.com/tardis-sn/tardis/pull/1846) Fix Virtual Packet Logging Bug (#1846) (@atharva-2001)
+
+### release-2021.12.19 (2021/12/13 18:38 +00:00)
+- [#1834](https://github.com/tardis-sn/tardis/pull/1834) Adding Luminosity Integral Explanation to Supernova Configuration (#1834) (@bartnikm)
+- [#1842](https://github.com/tardis-sn/tardis/pull/1842) Fixed fstring issue from mixing quotes and reformatted files from fstring PR with black (#1842) (@Rodot-)
+- [#1841](https://github.com/tardis-sn/tardis/pull/1841) Fixed the Failing Documentation for Tracking `RPacket` Feature  (#1841) (@DhruvSondhi)
+
+### release-2021.12.12 (2021/12/10 17:30 +00:00)
+- [#1835](https://github.com/tardis-sn/tardis/pull/1835) Reorganizing docs for website release (#1835) (@smithis7)
+- [#1748](https://github.com/tardis-sn/tardis/pull/1748) Tracking RPacket Properties in Montecarlo Single Packet Loop Function (#1748) (@DhruvSondhi)
+- [#1706](https://github.com/tardis-sn/tardis/pull/1706) Changed to fstring (#1706) (@svenkat19)
+- [#1833](https://github.com/tardis-sn/tardis/pull/1833) Editing instructions for contributing to the documentation (#1833) (@smithis7)
+
+### release-2021.12.5 (2021/12/02 19:14 +00:00)
+- [#1832](https://github.com/tardis-sn/tardis/pull/1832) Convert quantities to arrays when plotting in SDEC plot (#1832) (@atharva-2001)
+- [#1830](https://github.com/tardis-sn/tardis/pull/1830) Name plotly traces in SDEC plot (#1830) (@atharva-2001)
+
+### release-2021.11.28 (2021/11/25 17:29 +00:00)
+- [#1825](https://github.com/tardis-sn/tardis/pull/1825) changed all files to import constants from only tardis (#1825) (@shilpiprd)
+
+### release-2021.11.14 (2021/11/12 14:24 +00:00)
+- [#1799](https://github.com/tardis-sn/tardis/pull/1799) Bug fixes and Improvements in Custom Abundance Widget (#1799) (@yuyizheng1112)
+- [#1803](https://github.com/tardis-sn/tardis/pull/1803) Option to make docs build in parallel (#1803) (@smithis7)
+- [#1817](https://github.com/tardis-sn/tardis/pull/1817) Fixing SDEC docs page (#1817) (@smithis7)
+
 ### release-2021.10.31 (2021/10/27 19:00 +00:00)
 - [#1821](https://github.com/tardis-sn/tardis/pull/1821) remove numexpr  (#1821) (@wkerzendorf)
 - [#1788](https://github.com/tardis-sn/tardis/pull/1788) Add cmap option to specify the colormap of abundance plot (#1788) (@yuyizheng1112)
@@ -806,10 +926,10 @@
 - [#225](https://github.com/tardis-sn/tardis/pull/225) Test added in test_atomic.py (@vaibhav4595)
 - [#223](https://github.com/tardis-sn/tardis/pull/223) Update git_workflow.rst (@ujjwalwahi)
 
-### 1.0rc3 (2015/03/03 12:54 +00:00)
+### v1.0 (2015/03/03 12:58 +00:00)
 - [#219](https://github.com/tardis-sn/tardis/pull/219) fixing run_tardis (@wkerzendorf)
 
-### 1.0.dev1419 (2015/02/19 13:58 +00:00)
+### v1.0rc3 (2015/02/19 14:40 +00:00)
 - [#218](https://github.com/tardis-sn/tardis/pull/218) Docs/anaconda install (@wkerzendorf)
 - [#217](https://github.com/tardis-sn/tardis/pull/217) Docs/fixing pip requirements (@wkerzendorf)
 - [#216](https://github.com/tardis-sn/tardis/pull/216) some fixes to the gui so it works with pyside (@wkerzendorf)
@@ -840,8 +960,6 @@
 - [#164](https://github.com/tardis-sn/tardis/pull/164) Config/toggle validation (@wkerzendorf)
 - [#151](https://github.com/tardis-sn/tardis/pull/151) WIP Montecarlo C Rewrite (@orbitfold)
 - [#160](https://github.com/tardis-sn/tardis/pull/160) how to get constant density? broken? (@wkerzendorf)
-
-### 0.9.2 (2014/06/12 23:37 +00:00)
 - [#158](https://github.com/tardis-sn/tardis/pull/158) updated astropy_helpers version (@wkerzendorf)
 - [#157](https://github.com/tardis-sn/tardis/pull/157) added yaml to pip-requirements and linked the doc pip-requirements to this (@wkerzendorf)
 - [#154](https://github.com/tardis-sn/tardis/pull/154) renamed Config to ConfigurationValidator (@wkerzendorf)
@@ -886,8 +1004,6 @@
 - [#101](https://github.com/tardis-sn/tardis/pull/101) Fix for Issue #88: Moved test functions for tardis.util from test_config_reader (@thegyro)
 - [#94](https://github.com/tardis-sn/tardis/pull/94) Fix coveralls (@wkerzendorf)
 - [#87](https://github.com/tardis-sn/tardis/pull/87) Added --profile and --profiler_log_file command line arguments to enable... (@orbitfold)
-
-### 0.9.1 (2014/02/04 01:51 +00:00)
 - [#74](https://github.com/tardis-sn/tardis/pull/74) fixed manifest to incluse ez_setup.py and setuptools_bootstrap.py. fixes... (@wkerzendorf)
 - [#78](https://github.com/tardis-sn/tardis/pull/78) cosmetic fixes (@ssim)
 - [#77](https://github.com/tardis-sn/tardis/pull/77) Docs edit (@ssim, @wkerzendorf)

diff --git a/CITATION.cff b/CITATION.cff
@@ -4,7 +4,7 @@ cff-version: 1.0.3
 message: If you use this software, please cite it using these metadata.
 # FIXME title as repository name might not be the best name, please make human readable
 title: 'tardis-sn/tardis: TARDIS v2022.4.24'
-doi: 10.5281/zenodo.6480576
+doi: 10.5281/zenodo.6518540
 # FIXME splitting of full names is error prone, please check if given/family name are correct
 authors:
 - given-names: Wolfgang
@@ -180,7 +180,7 @@ authors:
   family-names: Kolliboyina
 - given-names: Atul
   family-names: Kumar
-version: release-2022.4.24
-date-released: 2022-04-24
+version: release-2022.05.04
+date-released: 2022-05-04
 repository-code: https://github.com/tardis-sn/tardis
 license: other-open