WIP: Update_packaging #3
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Python Tests | |
| on: [pull_request] | |
| jobs: | |
| test: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| max-parallel: 4 | |
| matrix: | |
| os: [macos-latest, ubuntu-latest] | |
| python-version: ["3.8", "3.12"] | |
| steps: | |
| # Checkout the latest commit associated with the PR | |
| - uses: actions/checkout@v4 | |
| # Set up Miniforge | |
| - name: Set up Miniforge Python ${{ matrix.python-version }} | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniforge-version: "latest" | |
| python-version: ${{ matrix.python-version }} | |
| auto-activate-base: true | |
| channels: conda-forge,bioconda | |
| # Install any additional dependencies not included in the pyproject.toml file | |
| - name: Install additional dependencies | |
| shell: bash -l {0} | |
| run: | | |
| conda install -y -c conda-forge -c bioconda bedtools imagemagick libmagic wand | |
| pip install '.[tests]' # Install all dependencies, including test-specific ones | |
| # Run pytest on the specified directory | |
| - name: Run tests | |
| shell: bash -l {0} | |
| run: | | |
| pytest -p no:warnings tests/ | |