WIP: Update_packaging #1

	name: Python Tests

	on: [pull_request]

	jobs:
	test:
	runs-on: ${{ matrix.os }}

	strategy:
	max-parallel: 4
	matrix:
	os: [ubuntu-latest, macos-latest]
	python-version: ["3.8", "3.12"]

	steps:
	# Checkout the latest commit associated with the PR
	- uses: actions/checkout@v4

	- name: Debug matrix value
	run: echo "Python version is ${{ matrix.python-version }}"

	# Set up Miniconda
	- name: Set up Miniconda
	uses: conda-incubator/setup-miniconda@v2
	with:
	auto-update-conda: true # Optional: update Conda to the latest version
	python-version: ${{ matrix.python-version }}

	# Install any additional dependencies not included in the pyproject.toml file
	- name: Install additional dependencies
	run: \|
	conda install -y -c conda-forge -c bioconda bedtools imagemagick libmagic wand
	pip install '.[tests]' # Install all dependencies, including test-specific ones
	shell: bash -l {0}

	# Run pytest on the specified directory
	- name: Run tests
	run: \|
	pytest -p no:warnings tests
	shell: bash -l {0}

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