rebuild graphs, javadoc and binary distribution at 2e587be

build/javadoc/index-all.html

@@ -2516,10 +2516,6 @@ <h2 class="title">D</h2>
 <dd>
 <div class="block">Total length of time (ms) people were in this state.</div>
 </dd>
-<dt><span class="memberNameLink"><a href="org/mitre/synthea/helpers/TransitionMetrics.html#durationOf(long)">durationOf(long)</a></span> - Static method in class org.mitre.synthea.helpers.<a href="org/mitre/synthea/helpers/TransitionMetrics.html" title="class in org.mitre.synthea.helpers">TransitionMetrics</a></dt>
-<dd>
-<div class="block">Helper function to convert a # of milliseconds into a human-readable string.</div>
-</dd>
 </dl>
 <a id="I:E">
 <!--   -->
@@ -2582,6 +2578,8 @@ <h2 class="title">E</h2>
 <dd>&nbsp;</dd>
 <dt><span class="memberNameLink"><a href="org/mitre/synthea/engine/State.html#ENABLE_PHYSIOLOGY_STATE">ENABLE_PHYSIOLOGY_STATE</a></span> - Static variable in class org.mitre.synthea.engine.<a href="org/mitre/synthea/engine/State.html" title="class in org.mitre.synthea.engine">State</a></dt>
 <dd>&nbsp;</dd>
+<dt><span class="memberNameLink"><a href="org/mitre/synthea/helpers/TransitionMetrics.html#enabled">enabled</a></span> - Static variable in class org.mitre.synthea.helpers.<a href="org/mitre/synthea/helpers/TransitionMetrics.html" title="class in org.mitre.synthea.helpers">TransitionMetrics</a></dt>
+<dd>&nbsp;</dd>
 <dt><span class="memberNameLink"><a href="org/mitre/synthea/engine/Generator.GeneratorOptions.html#enabledModules">enabledModules</a></span> - Variable in class org.mitre.synthea.engine.<a href="org/mitre/synthea/engine/Generator.GeneratorOptions.html" title="class in org.mitre.synthea.engine">Generator.GeneratorOptions</a></dt>
 <dd>&nbsp;</dd>
 <dt><span class="memberNameLink"><a href="org/mitre/synthea/export/Exporter.ExporterRuntimeOptions.html#enableQueue(org.mitre.synthea.export.Exporter.SupportedFhirVersion)">enableQueue(Exporter.SupportedFhirVersion)</a></span> - Method in class org.mitre.synthea.export.<a href="org/mitre/synthea/export/Exporter.ExporterRuntimeOptions.html" title="class in org.mitre.synthea.export">Exporter.ExporterRuntimeOptions</a></dt>
@@ -2666,6 +2664,14 @@ <h2 class="title">E</h2>
 </dd>
 <dt><span class="memberNameLink"><a href="org/mitre/synthea/export/rif/BB2RIFStructure.BENEFICIARY.html#ENRL_SRC">ENRL_SRC</a></span> - org.mitre.synthea.export.rif.<a href="org/mitre/synthea/export/rif/BB2RIFStructure.BENEFICIARY.html" title="enum in org.mitre.synthea.export.rif">BB2RIFStructure.BENEFICIARY</a></dt>
 <dd>&nbsp;</dd>
+<dt><span class="memberNameLink"><a href="org/mitre/synthea/helpers/TransitionMetrics.Metric.html#enter(boolean)">enter(boolean)</a></span> - Method in class org.mitre.synthea.helpers.<a href="org/mitre/synthea/helpers/TransitionMetrics.Metric.html" title="class in org.mitre.synthea.helpers">TransitionMetrics.Metric</a></dt>
+<dd>
+<div class="block">Helper function to increment the counts when a state is entered.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="org/mitre/synthea/helpers/TransitionMetrics.html#enter(java.lang.String,java.lang.String,boolean)">enter(String, String, boolean)</a></span> - Static method in class org.mitre.synthea.helpers.<a href="org/mitre/synthea/helpers/TransitionMetrics.html" title="class in org.mitre.synthea.helpers">TransitionMetrics</a></dt>
+<dd>
+<div class="block">Track entering a state within a given module.</div>
+</dd>
 <dt><span class="memberNameLink"><a href="org/mitre/synthea/engine/State.html#entered">entered</a></span> - Variable in class org.mitre.synthea.engine.<a href="org/mitre/synthea/engine/State.html" title="class in org.mitre.synthea.engine">State</a></dt>
 <dd>&nbsp;</dd>
 <dt><span class="memberNameLink"><a href="org/mitre/synthea/helpers/TransitionMetrics.Metric.html#entered">entered</a></span> - Variable in class org.mitre.synthea.helpers.<a href="org/mitre/synthea/helpers/TransitionMetrics.Metric.html" title="class in org.mitre.synthea.helpers">TransitionMetrics.Metric</a></dt>
@@ -2779,6 +2785,14 @@ <h2 class="title">E</h2>
 <dd>
 <div class="block">Execute scripts against the given Bundle.</div>
 </dd>
+<dt><span class="memberNameLink"><a href="org/mitre/synthea/helpers/TransitionMetrics.Metric.html#exit(java.lang.String,long)">exit(String, long)</a></span> - Method in class org.mitre.synthea.helpers.<a href="org/mitre/synthea/helpers/TransitionMetrics.Metric.html" title="class in org.mitre.synthea.helpers">TransitionMetrics.Metric</a></dt>
+<dd>
+<div class="block">Helper function to increment the count for a destination state.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="org/mitre/synthea/helpers/TransitionMetrics.html#exit(java.lang.String,java.lang.String,java.lang.String,long)">exit(String, String, String, long)</a></span> - Static method in class org.mitre.synthea.helpers.<a href="org/mitre/synthea/helpers/TransitionMetrics.html" title="class in org.mitre.synthea.helpers">TransitionMetrics</a></dt>
+<dd>
+<div class="block">Track exiting a state and the resulting destination.</div>
+</dd>
 <dt><span class="memberNameLink"><a href="org/mitre/synthea/engine/State.html#exited">exited</a></span> - Variable in class org.mitre.synthea.engine.<a href="org/mitre/synthea/engine/State.html" title="class in org.mitre.synthea.engine">State</a></dt>
 <dd>&nbsp;</dd>
 <dt><span class="memberNameLink"><a href="org/mitre/synthea/helpers/TerminologyClient.html#expand(org.hl7.fhir.r4.model.UriType,org.hl7.fhir.r4.model.IntegerType,org.hl7.fhir.r4.model.IntegerType)">expand(UriType, IntegerType, IntegerType)</a></span> - Method in interface org.mitre.synthea.helpers.<a href="org/mitre/synthea/helpers/TerminologyClient.html" title="interface in org.mitre.synthea.helpers">TerminologyClient</a></dt>
@@ -2945,6 +2959,10 @@ <h2 class="title">E</h2>
 <dd>
 <div class="block">Export metadata about the current run of Synthea.</div>
 </dd>
+<dt><span class="memberNameLink"><a href="org/mitre/synthea/helpers/TransitionMetrics.html#exportMetrics()">exportMetrics()</a></span> - Static method in class org.mitre.synthea.helpers.<a href="org/mitre/synthea/helpers/TransitionMetrics.html" title="class in org.mitre.synthea.helpers">TransitionMetrics</a></dt>
+<dd>
+<div class="block">Exports the metrics as JSON in the exporter base directory.</div>
+</dd>
 <dt><span class="memberNameLink"><a href="org/mitre/synthea/export/rif/BB2RIFExporter.html#exportMissingCodes()">exportMissingCodes()</a></span> - Method in class org.mitre.synthea.export.rif.<a href="org/mitre/synthea/export/rif/BB2RIFExporter.html" title="class in org.mitre.synthea.export.rif">BB2RIFExporter</a></dt>
 <dd>
 <div class="block">Export codes that were not mappable during export.</div>
@@ -4050,10 +4068,6 @@ <h2 class="title">G</h2>
 <dd>
 <div class="block">Returns the number of medications this payer did not cover for their customers.</div>
 </dd>
-<dt><span class="memberNameLink"><a href="org/mitre/synthea/helpers/TransitionMetrics.html#getMetric(java.lang.String,java.lang.String)">getMetric(String, String)</a></span> - Method in class org.mitre.synthea.helpers.<a href="org/mitre/synthea/helpers/TransitionMetrics.html" title="class in org.mitre.synthea.helpers">TransitionMetrics</a></dt>
-<dd>
-<div class="block">Get the Metric object for the given State in the given Module.</div>
-</dd>
 <dt><span class="memberNameLink"><a href="org/mitre/synthea/engine/PhysiologySimulator.SimConfig.html#getModel()">getModel()</a></span> - Method in class org.mitre.synthea.engine.<a href="org/mitre/synthea/engine/PhysiologySimulator.SimConfig.html" title="class in org.mitre.synthea.engine">PhysiologySimulator.SimConfig</a></dt>
 <dd>&nbsp;</dd>
 <dt><span class="memberNameLink"><a href="org/mitre/synthea/helpers/physiology/PhysiologyGeneratorConfig.html#getModel()">getModel()</a></span> - Method in class org.mitre.synthea.helpers.physiology.<a href="org/mitre/synthea/helpers/physiology/PhysiologyGeneratorConfig.html" title="class in org.mitre.synthea.helpers.physiology">PhysiologyGeneratorConfig</a></dt>
@@ -4077,6 +4091,14 @@ <h2 class="title">G</h2>
 <div class="block">The the path to the modules directory, ensuring the right file system support is loaded if
  we are running from a jar file.</div>
 </dd>
+<dt><span class="memberNameLink"><a href="org/mitre/synthea/engine/Module.html#getModuleSuppliers()">getModuleSuppliers()</a></span> - Static method in class org.mitre.synthea.engine.<a href="org/mitre/synthea/engine/Module.html" title="class in org.mitre.synthea.engine">Module</a></dt>
+<dd>
+<div class="block">Get the list of ModuleSuppliers.</div>
+</dd>
+<dt><span class="memberNameLink"><a href="org/mitre/synthea/engine/Module.html#getModuleSuppliers(java.util.function.Predicate)">getModuleSuppliers(Predicate&lt;Module.ModuleSupplier&gt;)</a></span> - Static method in class org.mitre.synthea.engine.<a href="org/mitre/synthea/engine/Module.html" title="class in org.mitre.synthea.engine">Module</a></dt>
+<dd>
+<div class="block">Get a list of ModuleSuppliers, given a path predicate.</div>
+</dd>
 <dt><span class="memberNameLink"><a href="org/mitre/synthea/helpers/Utilities.html#getMonth(long)">getMonth(long)</a></span> - Static method in class org.mitre.synthea.helpers.<a href="org/mitre/synthea/helpers/Utilities.html" title="class in org.mitre.synthea.helpers">Utilities</a></dt>
 <dd>
 <div class="block">Get the month of a Unix timestamp.</div>
@@ -7470,8 +7492,6 @@ <h2 class="title">M</h2>
 <dd>&nbsp;</dd>
 <dt><span class="memberNameLink"><a href="org/mitre/synthea/helpers/TransitionMetrics.Metric.html#%3Cinit%3E()">Metric()</a></span> - Constructor for class org.mitre.synthea.helpers.<a href="org/mitre/synthea/helpers/TransitionMetrics.Metric.html" title="class in org.mitre.synthea.helpers">TransitionMetrics.Metric</a></dt>
 <dd>&nbsp;</dd>
-<dt><span class="memberNameLink"><a href="org/mitre/synthea/engine/Generator.html#metrics">metrics</a></span> - Variable in class org.mitre.synthea.engine.<a href="org/mitre/synthea/engine/Generator.html" title="class in org.mitre.synthea.engine">Generator</a></dt>
-<dd>&nbsp;</dd>
 <dt><span class="memberNameLink"><a href="org/mitre/synthea/world/concepts/VitalSign.html#MICROALBUMIN_CREATININE_RATIO">MICROALBUMIN_CREATININE_RATIO</a></span> - org.mitre.synthea.world.concepts.<a href="org/mitre/synthea/world/concepts/VitalSign.html" title="enum in org.mitre.synthea.world.concepts">VitalSign</a></dt>
 <dd>&nbsp;</dd>
 <dt><span class="memberNameLink"><a href="org/mitre/synthea/export/rif/BB2RIFStructure.NPI.html#MIDDLE_NAME">MIDDLE_NAME</a></span> - org.mitre.synthea.export.rif.<a href="org/mitre/synthea/export/rif/BB2RIFStructure.NPI.html" title="enum in org.mitre.synthea.export.rif">BB2RIFStructure.NPI</a></dt>
@@ -8696,10 +8716,6 @@ <h2 class="title">P</h2>
 <dd>
 <div class="block">Converts a JsonPrimitive into a primitive Boolean, Double, or String.</div>
 </dd>
-<dt><span class="memberNameLink"><a href="org/mitre/synthea/helpers/TransitionMetrics.html#printStats(int,java.util.Collection)">printStats(int, Collection&lt;Module&gt;)</a></span> - Method in class org.mitre.synthea.helpers.<a href="org/mitre/synthea/helpers/TransitionMetrics.html" title="class in org.mitre.synthea.helpers">TransitionMetrics</a></dt>
-<dd>
-<div class="block">Print the statistics that have been gathered.</div>
-</dd>
 <dt><span class="memberNameLink"><a href="org/mitre/synthea/engine/Logic.PriorState.html#%3Cinit%3E()">PriorState()</a></span> - Constructor for class org.mitre.synthea.engine.<a href="org/mitre/synthea/engine/Logic.PriorState.html" title="class in org.mitre.synthea.engine">Logic.PriorState</a></dt>
 <dd>&nbsp;</dd>
 <dt><span class="memberNameLink"><a href="org/mitre/synthea/world/agents/PayerManager.html#PRIVATE_OWNERSHIP">PRIVATE_OWNERSHIP</a></span> - Static variable in class org.mitre.synthea.world.agents.<a href="org/mitre/synthea/world/agents/PayerManager.html" title="class in org.mitre.synthea.world.agents">PayerManager</a></dt>
@@ -9468,10 +9484,6 @@ <h2 class="title">R</h2>
 <dd>
 <div class="block">Individual provider health records (if "hasMultipleRecords" is enabled).</div>
 </dd>
-<dt><span class="memberNameLink"><a href="org/mitre/synthea/helpers/TransitionMetrics.html#recordStats(org.mitre.synthea.world.agents.Person,long,java.util.Collection)">recordStats(Person, long, Collection&lt;Module&gt;)</a></span> - Method in class org.mitre.synthea.helpers.<a href="org/mitre/synthea/helpers/TransitionMetrics.html" title="class in org.mitre.synthea.helpers">TransitionMetrics</a></dt>
-<dd>
-<div class="block">Record all appropriate state transition information from the given person.</div>
-</dd>
 <dt><span class="memberNameLink"><a href="org/mitre/synthea/export/flexporter/FieldWrapper.html#REFERENCE_FIELDS">REFERENCE_FIELDS</a></span> - Static variable in class org.mitre.synthea.export.flexporter.<a href="org/mitre/synthea/export/flexporter/FieldWrapper.html" title="class in org.mitre.synthea.export.flexporter">FieldWrapper</a></dt>
 <dd>&nbsp;</dd>
 <dt><span class="memberNameLink"><a href="org/mitre/synthea/export/flexporter/FieldWrapper.ReferenceFieldWrapper.html#%3Cinit%3E(java.lang.Class,java.lang.String)">ReferenceFieldWrapper(Class&lt;? extends Resource&gt;, String)</a></span> - Constructor for class org.mitre.synthea.export.flexporter.<a href="org/mitre/synthea/export/flexporter/FieldWrapper.ReferenceFieldWrapper.html" title="class in org.mitre.synthea.export.flexporter">FieldWrapper.ReferenceFieldWrapper</a></dt>

build/javadoc/org/mitre/synthea/engine/Generator.html

@@ -203,41 +203,36 @@ <h3>Field Summary</h3>
 <td class="colLast">&nbsp;</td>
 </tr>
 <tr class="altColor">
-<td class="colFirst"><code><a href="../helpers/TransitionMetrics.html" title="class in org.mitre.synthea.helpers">TransitionMetrics</a></code></td>
-<th class="colSecond" scope="row"><code><span class="memberNameLink"><a href="#metrics">metrics</a></span></code></th>
-<td class="colLast">&nbsp;</td>
-</tr>
-<tr class="rowColor">
 <td class="colFirst"><code><a href="Generator.GeneratorOptions.html" title="class in org.mitre.synthea.engine">Generator.GeneratorOptions</a></code></td>
 <th class="colSecond" scope="row"><code><span class="memberNameLink"><a href="#options">options</a></span></code></th>
 <td class="colLast">&nbsp;</td>
 </tr>
-<tr class="altColor">
+<tr class="rowColor">
 <td class="colFirst"><code>long</code></td>
 <th class="colSecond" scope="row"><code><span class="memberNameLink"><a href="#referenceTime">referenceTime</a></span></code></th>
 <td class="colLast">&nbsp;</td>
 </tr>
-<tr class="rowColor">
+<tr class="altColor">
 <td class="colFirst"><code>java.util.Map&lt;java.lang.String,&#8203;java.util.concurrent.atomic.AtomicInteger&gt;</code></td>
 <th class="colSecond" scope="row"><code><span class="memberNameLink"><a href="#stats">stats</a></span></code></th>
 <td class="colLast">&nbsp;</td>
 </tr>
-<tr class="altColor">
+<tr class="rowColor">
 <td class="colFirst"><code>long</code></td>
 <th class="colSecond" scope="row"><code><span class="memberNameLink"><a href="#stop">stop</a></span></code></th>
 <td class="colLast">&nbsp;</td>
 </tr>
-<tr class="rowColor">
+<tr class="altColor">
 <td class="colFirst"><code>int</code></td>
 <th class="colSecond" scope="row"><code><span class="memberNameLink"><a href="#threadPoolSize">threadPoolSize</a></span></code></th>
 <td class="colLast">&nbsp;</td>
 </tr>
-<tr class="altColor">
+<tr class="rowColor">
 <td class="colFirst"><code>long</code></td>
 <th class="colSecond" scope="row"><code><span class="memberNameLink"><a href="#timestep">timestep</a></span></code></th>
 <td class="colLast">&nbsp;</td>
 </tr>
-<tr class="rowColor">
+<tr class="altColor">
 <td class="colFirst"><code>java.util.concurrent.atomic.AtomicInteger</code></td>
 <th class="colSecond" scope="row"><code><span class="memberNameLink"><a href="#totalGeneratedPopulation">totalGeneratedPopulation</a></span></code></th>
 <td class="colLast">&nbsp;</td>
@@ -495,15 +490,6 @@ <h4>totalGeneratedPopulation</h4>
 <pre>public&nbsp;java.util.concurrent.atomic.AtomicInteger totalGeneratedPopulation</pre>
 </li>
 </ul>
-<a id="metrics">
-<!--   -->
-</a>
-<ul class="blockList">
-<li class="blockList">
-<h4>metrics</h4>
-<pre>public&nbsp;<a href="../helpers/TransitionMetrics.html" title="class in org.mitre.synthea.helpers">TransitionMetrics</a> metrics</pre>
-</li>
-</ul>
 <a id="DEFAULT_STATE">
 <!--   -->
 </a>