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develop <- master #1766

Merged
merged 6 commits into from
Sep 21, 2022
Merged

develop <- master #1766

merged 6 commits into from
Sep 21, 2022

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dependabot bot and others added 6 commits September 12, 2022 17:32
@dependabot
Bump actions/upload-release-asset from 1.0.1 to 1.0.2
b063be5 
Bumps [actions/upload-release-asset](https://github.com/actions/upload-release-asset) from 1.0.1 to 1.0.2.
- [Release notes](https://github.com/actions/upload-release-asset/releases)
- [Commits](actions/upload-release-asset@v1.0.1...v1.0.2)

---
updated-dependencies:
- dependency-name: actions/upload-release-asset
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot
Bump actions/cache from 1 to 3
108699a 
Bumps [actions/cache](https://github.com/actions/cache) from 1 to 3.
- [Release notes](https://github.com/actions/cache/releases)
- [Changelog](https://github.com/actions/cache/blob/main/RELEASES.md)
- [Commits](actions/cache@v1...v3)

---
updated-dependencies:
- dependency-name: actions/cache
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot
Bump actions/upload-artifact from 1 to 3
3538194 
Bumps [actions/upload-artifact](https://github.com/actions/upload-artifact) from 1 to 3.
- [Release notes](https://github.com/actions/upload-artifact/releases)
- [Commits](actions/upload-artifact@v1...v3)

---
updated-dependencies:
- dependency-name: actions/upload-artifact
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
@pcarruscag
Merge pull request #1756 from su2code/dependabot/github_actions/actio…
199bf39 
…ns/upload-artifact-3

Bump actions/upload-artifact from 1 to 3
@pcarruscag
Merge pull request #1755 from su2code/dependabot/github_actions/actio…
f7fc4db 
…ns/cache-3

Bump actions/cache from 1 to 3
@pcarruscag
Merge pull request #1754 from su2code/dependabot/github_actions/actio…
769ae5c 
…ns/upload-release-asset-1.0.2

Bump actions/upload-release-asset from 1.0.1 to 1.0.2
@pcarruscag pcarruscag added the dependencies Pull requests that update a dependency file label Sep 21, 2022
@pcarruscag pcarruscag merged commit 2642f7f into develop Sep 21, 2022
RichRoos added a commit to RichRoos/SU2_feature_eN that referenced this pull request Sep 29, 2022
@RichRoos
Squashed commit of the following:
b841bf4 
commit 6e4e46e
Merge: 3c783fa a6bae1f
Author: Johannes Blühdorn <55186095+jblueh@users.noreply.github.com>
Date:   Thu Sep 29 13:30:09 2022 +0200

    Merge pull request su2code#1764 from su2code/misc_fixes

    Cleanup/fix regression tests and other small fixes

commit a6bae1f
Author: Johannes Blühdorn <johannes.bluehdorn@scicomp.uni-kl.de>
Date:   Thu Sep 29 10:53:41 2022 +0200

    Function for repeated code to allow MPI as root.

    Fix indentation.

commit 79a3bf9
Author: Johannes Blühdorn <johannes.bluehdorn@scicomp.uni-kl.de>
Date:   Wed Sep 28 16:44:46 2022 +0200

    Fix.

commit 9cced8e
Merge: dc6b77d 3c783fa
Author: Johannes Blühdorn <johannes.bluehdorn@scicomp.uni-kl.de>
Date:   Wed Sep 28 15:50:18 2022 +0200

    Merge branch 'develop' into misc_fixes

commit dc6b77d
Author: Johannes Blühdorn <johannes.bluehdorn@scicomp.uni-kl.de>
Date:   Wed Sep 28 15:00:32 2022 +0200

    Filediff tests don't need tolerances.

commit 977812c
Author: Johannes Blühdorn <johannes.bluehdorn@scicomp.uni-kl.de>
Date:   Wed Sep 28 14:53:26 2022 +0200

    Timeout and tol defaults for parallel_regression.py.

commit 94f4b23
Author: Johannes Blühdorn <johannes.bluehdorn@scicomp.uni-kl.de>
Date:   Wed Sep 28 14:37:41 2022 +0200

    Timeout and tol defaults for serial_regression.py.

commit 2c7cd33
Author: Johannes Blühdorn <johannes.bluehdorn@scicomp.uni-kl.de>
Date:   Wed Sep 28 14:01:23 2022 +0200

    Timeout and tol defaults for tutorials.py.

commit a239b46
Author: Johannes Blühdorn <johannes.bluehdorn@scicomp.uni-kl.de>
Date:   Wed Sep 28 13:49:22 2022 +0200

    Timeout and tol defaults for serial_regression_AD.py, updates.

commit 627f045
Author: Johannes Blühdorn <johannes.bluehdorn@scicomp.uni-kl.de>
Date:   Wed Sep 28 13:38:24 2022 +0200

    Small updates.

commit 4b151b8
Author: Johannes Blühdorn <johannes.bluehdorn@scicomp.uni-kl.de>
Date:   Wed Sep 28 12:23:52 2022 +0200

    Defaults on the TestCase level can be ambiguous.

commit 5e728c9
Author: Johannes Blühdorn <johannes.bluehdorn@scicomp.uni-kl.de>
Date:   Wed Sep 28 12:21:05 2022 +0200

    Timeout and tol defaults for parallel_regression_AD.py.

commit bf4d162
Author: Johannes Blühdorn <johannes.bluehdorn@scicomp.uni-kl.de>
Date:   Wed Sep 28 12:00:46 2022 +0200

    Make default timeout and tol visible.

commit 36c5698
Author: Johannes Blühdorn <johannes.bluehdorn@scicomp.uni-kl.de>
Date:   Wed Sep 28 11:58:06 2022 +0200

    Ensure that the test script does not kill itself.

commit 3c783fa
Merge: bc6ef2a 380f9f4
Author: Pedro Gomes <38071223+pcarruscag@users.noreply.github.com>
Date:   Tue Sep 27 19:24:45 2022 +0100

    Merge pull request su2code#1771 from su2code/improve_doxydocs

    Improve doxygen documentation

commit 1f15378
Author: Johannes Blühdorn <johannes.bluehdorn@scicomp.uni-kl.de>
Date:   Tue Sep 27 00:38:40 2022 +0200

    Update vandv.py and tutorials.py, reduce boilerplate.

    Default to the command "mpirun -n 2 SU2_CFD".

commit a57df4a
Author: Johannes Blühdorn <johannes.bluehdorn@scicomp.uni-kl.de>
Date:   Mon Sep 26 22:54:26 2022 +0200

    Update serial_regression_AD.py, reduce boilerplate.

    Default to the command "SU2_CFD_AD".

commit 39b8a4e
Author: Johannes Blühdorn <johannes.bluehdorn@scicomp.uni-kl.de>
Date:   Mon Sep 26 22:41:17 2022 +0200

    Update serial_regression.py, reduce boilerplate.

    Default to the command "SU2_CFD".

commit f86a4f8
Author: Johannes Blühdorn <johannes.bluehdorn@scicomp.uni-kl.de>
Date:   Mon Sep 26 22:17:10 2022 +0200

    Update hybrid and hybrid AD regression tests.

commit fcfa892
Author: Johannes Blühdorn <johannes.bluehdorn@scicomp.uni-kl.de>
Date:   Mon Sep 26 22:10:33 2022 +0200

    Update parallel_regression_AD.py, reduce boilerplate.

    Default to the command "mpirun -n 2 SU2_CFD_AD".
    Phase out parallel_computation.py.

commit 380f9f4
Author: Pedro Gomes <pcarruscag@gmail.com>
Date:   Mon Sep 26 19:45:24 2022 +0100

    add missing SIMD stuff to group

commit a01e788
Merge: 8d25605 bc6ef2a
Author: Pedro Gomes <pcarruscag@gmail.com>
Date:   Mon Sep 26 19:42:32 2022 +0100

    Merge remote-tracking branch 'upstream/develop' into improve_doxydocs

commit bc6ef2a
Merge: d32ccec c9af050
Author: Pedro Gomes <38071223+pcarruscag@users.noreply.github.com>
Date:   Mon Sep 26 19:41:53 2022 +0100

    Merge pull request su2code#1752 from su2code/vectorize_when_possible

    Always use vectorization when the numerical scheme supports it

commit 8026ae9
Author: Johannes Blühdorn <johannes.bluehdorn@scicomp.uni-kl.de>
Date:   Mon Sep 26 20:08:59 2022 +0200

    Update parallel_regression.py, reduce boilerplate.

    Default to the command "mpirun -n 2 SU2_CFD".
    Phase out parallel_computation.py.

commit 7cfaf54
Author: Johannes Blühdorn <johannes.bluehdorn@scicomp.uni-kl.de>
Date:   Mon Sep 26 19:46:34 2022 +0200

    Introduce a Command class and tidy up TestCase.py.

commit d32ccec
Merge: 2642f7f 205ec3f
Author: Pedro Gomes <38071223+pcarruscag@users.noreply.github.com>
Date:   Mon Sep 26 09:03:49 2022 +0100

    Merge pull request su2code#1772 from su2code/feature_hom_quickmerge

    Quick fix to a bug in CFlowOutput.cpp that crashes the FEM-DG solver

commit 205ec3f
Author: Zan-AA <xu.zan.2011@vjc.sg>
Date:   Sun Sep 25 15:22:56 2022 -0700

    add to AUTHORS.md

commit e0f7088
Author: Zan Xu <xu.zan.2011@vjc.sg>
Date:   Sun Sep 25 15:21:10 2022 -0700

    Update SU2_CFD/src/output/CFlowCompFEMOutput.cpp

    Co-authored-by: Pedro Gomes <38071223+pcarruscag@users.noreply.github.com>

commit f28296d
Author: Zan Xu <xu.zan.2011@vjc.sg>
Date:   Sun Sep 25 15:20:48 2022 -0700

    Update SU2_CFD/src/output/CFlowCompFEMOutput.cpp

    Co-authored-by: Pedro Gomes <38071223+pcarruscag@users.noreply.github.com>

commit 09e8e7f
Author: Zan-AA <xu.zan.2011@vjc.sg>
Date:   Sun Sep 25 11:56:31 2022 -0700

    mute the SetAnalyzeSurface function in the FEM-DG solver to aovid calling GetNode() function, and create an error message

commit 0628c9b
Author: Zan-AA <xu.zan.2011@vjc.sg>
Date:   Sun Sep 25 10:47:55 2022 -0700

    add a conditional operator in CFlowOutput.cpp to avoid GetNodes() function calling in DG solver, which results in assertion error

commit 8d25605
Author: Pedro Gomes <pcarruscag@gmail.com>
Date:   Sun Sep 25 11:33:54 2022 +0100

    group for VecExpr

commit 0c1b07b
Merge: e616fa1 c9af050
Author: Pedro Gomes <pcarruscag@gmail.com>
Date:   Sun Sep 25 11:24:59 2022 +0100

    Merge branch 'vectorize_when_possible' into improve_doxydocs

commit c9af050
Author: Pedro Gomes <pcarruscag@gmail.com>
Date:   Sun Sep 25 11:21:31 2022 +0100

    Revert "Revert "CoDiPack update.""

    This reverts commit fedec9e.

commit f963ffd
Author: Pedro Gomes <pcarruscag@gmail.com>
Date:   Sun Sep 25 11:20:48 2022 +0100

    convert the result of comparissons to passive type

commit fedec9e
Author: Pedro Gomes <pcarruscag@gmail.com>
Date:   Sat Sep 24 20:28:12 2022 +0100

    Revert "CoDiPack update."

    This reverts commit 750def1.

commit e616fa1
Author: Pedro Gomes <pcarruscag@gmail.com>
Date:   Sat Sep 24 16:22:33 2022 +0100

    small fixes and add more groups

commit 142587b
Author: Pedro Gomes <pcarruscag@gmail.com>
Date:   Sat Sep 24 16:06:42 2022 +0100

    add some instructions to generate the docs, cleanup and tweak settings

commit 92bfafc
Author: Pedro Gomes <pcarruscag@gmail.com>
Date:   Sat Sep 24 15:35:56 2022 +0100

    move doc files

commit 0b5991a
Merge: 59b5041 750def1
Author: Pedro Gomes <pcarruscag@gmail.com>
Date:   Sat Sep 24 14:38:18 2022 +0100

    Merge remote-tracking branch 'upstream/vectorize_when_possible' into vectorize_when_possible

commit 59b5041
Author: Pedro Gomes <pcarruscag@gmail.com>
Date:   Sat Sep 24 14:36:28 2022 +0100

    fix min/max problems? remove USE_VECTORIZATION from testcases

commit 750def1
Author: Johannes Blühdorn <johannes.bluehdorn@scicomp.uni-kl.de>
Date:   Fri Sep 23 14:57:35 2022 +0200

    CoDiPack update.

commit 92fdc3d
Merge: 87f451e 2642f7f
Author: Pedro Gomes <38071223+pcarruscag@users.noreply.github.com>
Date:   Wed Sep 21 19:04:22 2022 +0200

    Merge branch 'develop' into vectorize_when_possible

commit 2642f7f
Merge: 9a7c038 769ae5c
Author: Pedro Gomes <38071223+pcarruscag@users.noreply.github.com>
Date:   Wed Sep 21 19:03:48 2022 +0200

    Merge pull request su2code#1766 from su2code/master

    develop <- master

commit 735abb6
Author: Pedro Gomes <pcarruscag@gmail.com>
Date:   Tue Sep 20 19:35:19 2022 +0100

    add groups for a bunch of stuff

commit 9a7c038
Author: Nijso <nijso@hotmail.com>
Date:   Tue Sep 20 16:22:44 2022 +0200

    FFD box fix for nonplanar faces (su2code#1742)

    * FFD box uses supporting point in the middle of the face to avoid ambiguous definition of nonplanar faces

    * implementation of github review comments (formatting and deleting memory)

    * Apply suggestions from code review

    Co-authored-by: Pedro Gomes <38071223+pcarruscag@users.noreply.github.com>

commit 87f451e
Author: Pedro Gomes <38071223+pcarruscag@users.noreply.github.com>
Date:   Mon Sep 19 12:41:17 2022 +0100

    Update SU2_CFD/include/numerics_simd/flow/convection/common.hpp

    Co-authored-by: Nijso <nijso@hotmail.com>

commit 37b4f58
Author: Pedro Gomes <pcarruscag@gmail.com>
Date:   Mon Sep 19 12:39:15 2022 +0100

    updates after simd size of 1 for reverse AD

commit 4357145
Author: Pedro Gomes <pcarruscag@gmail.com>
Date:   Sun Sep 18 21:24:46 2022 +0100

    regression updates and SIMD size 1 for reverse AD

commit c0a8d7c
Merge: 6a680ec 88c8392
Author: Pedro Gomes <pcarruscag@gmail.com>
Date:   Sat Sep 17 16:22:47 2022 +0100

    Merge remote-tracking branch 'upstream/develop' into vectorize_when_possible

commit 2c016a7
Merge: 11ee7fa 88c8392
Author: Johannes Blühdorn <johannes.bluehdorn@scicomp.uni-kl.de>
Date:   Fri Sep 16 16:04:49 2022 +0200

    Merge branch 'develop' into misc_fixes

commit 11ee7fa
Author: Johannes Blühdorn <johannes.bluehdorn@scicomp.uni-kl.de>
Date:   Fri Sep 16 16:03:32 2022 +0200

    Adapt tutorials.py and vandv.py.

commit 6a680ec
Author: Pedro Gomes <pcarruscag@gmail.com>
Date:   Wed Sep 14 21:45:47 2022 +0100

    work around some forward mode issues

commit c372fa2
Author: Johannes Blühdorn <johannes.bluehdorn@scicomp.uni-kl.de>
Date:   Wed Sep 14 19:15:03 2022 +0200

    Fix.

commit 4a54740
Author: Johannes Blühdorn <johannes.bluehdorn@scicomp.uni-kl.de>
Date:   Wed Sep 14 19:14:55 2022 +0200

    Ensure to pass killall the correct process name.

commit 88bdc9d
Author: Johannes Blühdorn <johannes.bluehdorn@scicomp.uni-kl.de>
Date:   Tue Sep 13 15:55:18 2022 +0200

    Adapt ninja command for builds outside the SU2 directory.

commit 713fb81
Author: Johannes Blühdorn <johannes.bluehdorn@scicomp.uni-kl.de>
Date:   Tue Sep 13 15:51:35 2022 +0200

    Fix const inconsistency between declaration/definition.

commit 1166497
Author: Pedro Gomes <pcarruscag@gmail.com>
Date:   Mon Sep 12 18:33:51 2022 +0100

    serial and v&v tests

commit c808e8d
Author: Pedro Gomes <pcarruscag@gmail.com>
Date:   Mon Sep 12 12:41:00 2022 +0100

    update parallel regression

commit ac58780
Author: Pedro Gomes <pcarruscag@gmail.com>
Date:   Mon Sep 12 12:31:03 2022 +0100

    update hybrid regression

commit 41aa1d8
Author: Pedro Gomes <pcarruscag@gmail.com>
Date:   Mon Sep 12 11:54:21 2022 +0100

    prevent nans with wall functions

commit ef4de7d
Merge: b8515c7 013c3cd
Author: Pedro Gomes <pcarruscag@gmail.com>
Date:   Sun Sep 11 23:00:56 2022 +0100

    Merge remote-tracking branch 'upstream/develop' into vectorize_when_possible

commit b8515c7
Author: Pedro Gomes <pcarruscag@gmail.com>
Date:   Sun Sep 11 23:00:11 2022 +0100

    MG segfault

commit 004b67b
Author: Pedro Gomes <pcarruscag@gmail.com>
Date:   Sun Sep 11 21:20:30 2022 +0100

    fix leak

commit 3f6af89
Author: Pedro Gomes <pcarruscag@gmail.com>
Date:   Sun Sep 11 18:57:31 2022 +0100

    this is what "using namespace std" does

commit c841509
Author: Pedro Gomes <pcarruscag@gmail.com>
Date:   Sun Sep 11 15:04:56 2022 +0100

    proper fix

commit 5f0e319
Author: Pedro Gomes <pcarruscag@gmail.com>
Date:   Sun Sep 11 14:19:19 2022 +0100

    fix build and some doxygen cleanup

commit 2edca53
Author: Pedro Gomes <pcarruscag@gmail.com>
Date:   Sun Sep 11 11:45:53 2022 +0100

    automatically use vectorized Roe when possible

commit 6c53381
Author: Pedro Gomes <pcarruscag@gmail.com>
Date:   Sat Sep 10 22:01:07 2022 +0100

    use the non physical counter in SIMD numerics
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