Update dependencies

Also change desktop file to give feedback to users while our
subrepos and Spyder are being installed on editable mode.

binder/Desktop/Spyder.desktop

@@ -2,7 +2,7 @@
 Version=1.0
 Type=Application
 Name=Spyder master
-Exec=/bin/bash -c "exec ${HOME}/spyder/bootstrap.py"
+Exec=gnome-terminal --geometry 120x24 -e "/bin/bash -c 'exec ${HOME}/spyder/bootstrap.py'"
 # FIXME: Don't hardcode Path?
 Icon=/home/jovyan/spyder/img_src/spyder.svg
 Path=/home/jovyan/Desktop

binder/environment.yml

@@ -1,44 +1,41 @@
 dependencies:
 # Main dependencies
-- applaunchservices >=0.1.7
 - atomicwrites >=1.2.0
 - chardet >=2.0.0
 - cloudpickle >=0.5.0
 - cookiecutter >=1.6.0
 - diff-match-patch >=20181111
 - intervaltree >=3.0.2
-- ipython >=7.6.0
-- jedi =0.17.2
+- ipython >=7.31.1,<8.0.0
+- jedi >=0.17.2,<0.19.0
+- jellyfish >=0.7
 - jsonschema >=3.2.0
 - keyring >=17.0.0
 - nbconvert >=4.0
 - numpydoc >=0.6.0
-- paramiko >=2.4.0
-- parso =0.7.0
+- parso >=0.7.0,<0.9.0
 - pexpect >=4.4.0
 - pickleshare >=0.4
 - psutil >=5.3
 - pygments >=2.0
-- pylint >=1.0
-- pyls-black >=0.4.6
-- pyls-spyder >=0.3.2,<0.4.0
-- pyqt <5.13
-# NOTE: There's no need to set constraints for python-language-server
-# here because Spyder uses the subrepo for it when started in Binder.
-- python-language-server
+- pylint >=2.5.0,<3.0
+- pylint-venv >=2.1.1
+- pyls-spyder >=0.4.0
+- pyqt <5.16
+- pyqtwebengine <5.16
+- python-lsp-black >=1.2.0
+- python-lsp-server >=1.5.0,<1.6.0
 - pyxdg >=0.26
-- pyzmq >=17
-- qdarkstyle =3.0.2
-- qstylizer >=0.1.10
+- pyzmq >=22.1.0
+- qdarkstyle >=3.0.2,<3.1.0
+- qstylizer >=0.2.2
 - qtawesome >=1.0.2
-- qtconsole >=5.1.0
-- qtpy >=1.5.0
+- qtconsole >=5.3.2,<5.4.0
+- qtpy >=2.1.0
 - rtree >=0.9.7
-- setuptools >=39.0.0
+- setuptools >=49.6.0
 - sphinx >=0.6.6
-# NOTE: There's no need to set constraints for spyder-kernels here
-# because Spyder uses the subrepo for it when started in Binder.
-- spyder-kernels
+- spyder-kernels >=2.3.3,<2.4.0
 - textdistance >=4.2.0
 - three-merge >=0.1.1
 - watchdog >=0.10.3
@@ -50,12 +47,13 @@ dependencies:
 - matplotlib
 - pandas
 - pillow
-- pytest <6.0
+- pytest <7.0
 - pytest-cov
 - pytest-lazy-fixture
-- pytest-ordering
+- pytest-mock
+- pytest-order
 - pytest-qt
-- pytest-xvfb
+- pytest-timeout
 - pyyaml
 - scipy
 - sympy