MRG: fix ANI from non-rocksdb gather output #361
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This was referenced Jun 19, 2024
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This PR should wait for sourmash-bio/sourmash#3218 to be merged and a new version of sourmash-rs core to be released, and then we can update it and put it up for merge! |
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Calculate ANI of matches against original query with `f_orig_query` and `f_match_orig`, instead of against `f_unique_to_query` and `f_match`. This fixes the ANI differences between `sourmash gather` and RocksDB branchwater gather for the columns `query_containment_ani`, `match_containment_ani`, `max_containment_ani`, and `average_containment_ani`. Refs: * Used by sourmash-bio/sourmash_plugin_branchwater#361 * Fixes RocksDB-based calculations for sourmash-bio/sourmash_plugin_branchwater#331
…water into fix_gather_ani
This was referenced Jun 20, 2024
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Calculate ANI of matches against original query with
f_orig_queryandf_match_orig, instead of againstf_unique_to_queryandf_match.This fixes the ANI differences between
sourmash gatherand non-RocksDB branchwater gather for the columnsquery_containment_ani,match_containment_ani,max_containment_ani, andaverage_containment_ani.This also brings in the sourmash core working branch sourmash-bio/sourmash#3218 which fixes the RocksDB-based numbers.
Fixes #331 🎉